HsaINT0107883 @ hg38
Intron Retention
Gene
ENSG00000078814 | MYH7B
Description
myosin heavy chain 7B [Source:HGNC Symbol;Acc:HGNC:15906]
Coordinates
chr20:34987557-34987914:+
Coord C1 exon
chr20:34987557-34987675
Coord A exon
chr20:34987676-34987764
Coord C2 exon
chr20:34987765-34987914
Length
89 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
3' ss Seq
CAGCCTCCCTGCACCTCCAGGTG
3' ss Score
9.34
Exon sequences
Seq C1 exon
GTGCTGACAAGGCTGCCTACCTGATGGGGGTCAGCAGTGGGGACCTCCTCAAAGGCCTTTTGCACCCCCGGGTGCGTGTAGGGAACGAGTACGTGACCAAGGGCCAGAGTGTGGAGCAG
Seq A exon
GTGAGCTGCCTGCAGGCCAAACCCATGGGGGACAGCCGGGCAGGGTCCCCTCCTTGCCAGGTCCCAGCCCAGCCTCCCTGCACCTCCAG
Seq C2 exon
GTGGTGTTTGCTGTGGGGGCTCTGGCCAAGGCCACCTATGACCGGCTGTTCAGGTGGCTGGTGTCTCGGATCAACCAGACCCTGGACACAAAGCTGCCCCGGCAGTTCTTCATCGGGGTTCTGGACATCGCTGGGTTTGAGATCTTTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000078814:ENST00000262873:15
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(5.7=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(10.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTCCTCAAAGGCCTTTTGCA
R:
CAGCTTTGTGTCCAGGGTCTG
Band lengths:
172-261
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development