BtaINT0097225 @ bosTau6
Intron Retention
Gene
ENSBTAG00000018399 | MYH15
Description
myosin, heavy chain 15 [Source:HGNC Symbol;Acc:HGNC:31073]
Coordinates
chr1:53628275-53629691:-
Coord C1 exon
chr1:53629509-53629691
Coord A exon
chr1:53628408-53629508
Coord C2 exon
chr1:53628275-53628407
Length
1101 bp
Sequences
Splice sites
5' ss Seq
GTGGTAGGT
5' ss Score
7.23
3' ss Seq
AACTACATGCCTTTCCAAAGGTG
3' ss Score
5.71
Exon sequences
Seq C1 exon
CAACCAATGGGCATCTTTTCCATCCTCGAAGAAGAATGTATGTTTCATCAGGCTACAGATGTGACTTTCAATACCAAACTTTTTGACAACCATTTTGGAAAGTCAGTTCATTTCCAGAAGCCCAAGCCTGACAATAAGAAGAAATATGAAGCTGACTTTGAACTTGTCCATTATGCAGGAGTG
Seq A exon
GTAGGTTACTTCTAGACCCTTAGCCCTGAATTATCTTGCCTCTATTTCAAATGAACTCAGTCCGAATTTTTAGATAATATATAAGTAAATATATCTGTAAAGTTTAGATTAAATGAAGAGATGAACAAAATAAATCTCAGTTCCCCAAAAAAGTTGGTGTAGACTTTTAGTACTTAGGAAATGAAATACCATACTATAATAACAGAGGTCAAAAATTTCAAAAGTAGATTCTCACCCAATACAAAGTAAGACAGTTTCAGAAAGTCTCGGAGACCATCAAAGGCACGGGCTTTTCCTTATTCATCCTTTCTTTCAACTGCACATTGTGTGAATGAGTGATTTCAACTGATCTTTTTACTGAAGTTTTTTTTTTTTTTTTTTCATTCTCTCATAAAGAGTCACTATGAGATAATGGTCTCTAAACTATGACCAACAAAGATTCCTAATGCCCCTCACTCCCTCACCTCATTTCCCCACTGGGGGTATATGTGTGTGTGTGTGTGTGTGTTCACATACGTGCCTGTGCCCTTTCATTCTGCTTTTATGATTCTGGTCAGTGATTCTGGGTAGAAGAAAGAGAACTGATAAAGGATAAAATAATATTCGACCTAAAAATGACCTGCCAATTATACCTAGATATGTTTGTAACTCTCTTCTTTGATATCCTTGAATATTAATTATAATAATATTTACAGTGAAATGCTATAGCATTTATGGAGTGCTCACCTTGTGTCAGAGGCAGTTGTTTTATTCCATCTACTTTTGCCTATATGAAGGAGGGCTGATGTGAATTGTTTGTCCTGGAAACACCATCTATTTCTTCCACCCCCTCTGGTTTAGTGTTCCTCTCCCTCCCTGCCTCTTCTTCCCTCTCCCTCCCTCCCTTTCTCTTCCTTTTTTTCCACAGTATAAATGGTAAAGCCTGAGAAGCTCTTTGGGTTGCACATAGGTTTCTGGAGTATTTTTTAAGTACTGTTACATTAAACTGATTTAAGTTCAAATGACATACACGATGTATGATTTTTTAAAAGAATTACATAATTTGCTAAGGAACTTATGCATTCTCCTTTTTTGTTACCTGAACTACATGCCTTTCCAAAG
Seq C2 exon
GTGCCTTATAACATCAGTGGCTGGCTTGAAAAGAACAAAGACTTTCTTAATGAAACAGTGGTGGCTATATTTCAGAAGTCATCCAACAGACTCCTGGCAAACCTTTTTGAAAATTACATCAGTACCAACACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000018399:ENSBTAT00000032372:16
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(8.9=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(6.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAATGGGCATCTTTTCCATCC
R:
AGTGTTGGTACTGATGTAATTTTCAA
Band lengths:
312-1413
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development