GgaINT0119185 @ galGal3
Intron Retention
Gene
ENSGALG00000015358 | Q91377_CHICK
Description
NA
Coordinates
chr1:90803260-90804785:-
Coord C1 exon
chr1:90804606-90804785
Coord A exon
chr1:90803393-90804605
Coord C2 exon
chr1:90803260-90803392
Length
1213 bp
Sequences
Splice sites
5' ss Seq
TCAGTAAGT
5' ss Score
9.14
3' ss Seq
TTTTCAATGCCTTGCTGTAGGTT
3' ss Score
8.25
Exon sequences
Seq C1 exon
CCACTAGGAATCCTGTCTATCCTTGAAGAAGAATGTATGTTCCCAAAAGCTACAGATATGACGTTCAAAGCCAAACTTTACGACAACCATCTTGGCAAGTCACCTAACTTGCAGAAGCCCAGGCCTGATAAGAAAAGGAAATATGAAGCTCACTTTGAACTTATTCATTATGCTGGCTCA
Seq A exon
GTAAGTTCCTCTGCTTGCAGGTAGATCTTATATTAGAGGGCTTCCAGGTGGGGTTTAGCCCATGATGTGCAATGTAGGAGGGTGGGAAGGCTGAAGAGAGAAACATAGGAGCAGTGAGGACTAAGAGCAGATGTTTGCTCTCTCTGCCTAATTATTGCCACACAGTATGATGCCATCAGCCTCCAAGACATCCGGTCCTTGGCTGTACAGATAAAGGGAACAAACTGAGAGCTAATAGCAGTGCTGCTGAAAATACGGTTTGTCTTTTTTACTTTTCCAATAATCAGATTAATGATTAATCAGTAGCAGCAGCAAACTTTCCATCTTGATTCCCTTCACAAATGAACTGAGCCATCTCTGTCTAACCAAAAAGTTAAAAAAAAAAAAAAAAAAATTAACATCACTTTTTACTTATGTTAGGACCACTATGTCAGTATAGCCAAAGGAAATGTGGTTGATTTTGCTGTGAAGGTTTAGTTAACAGGCCTGCAGTTGATGGGGCGAGGAAATACAGTCCAGTACTGTGACATCTTAGCCAAAAGTTAACCAGTTTCAAAGCTGCTTTAAGACCAGATGGCAGAAAGAGTTTGAGAGGGATATAGGATTATCTATTTTTATTTTTTTAAATAAAGCTAACATAGGTATGGAGGCTCAATACAGCAGAGCTGGAATCTAGCTGGTACTAGTTTAAGATAATTTCAAAGTACAGTTGAACTTTAAGCTGACTTTGTATTTATTATGAGAAATATTGCCTTTCTTACTCTTTATCTGTAGATGTTAGTGTATTCTGCAAAGGAAATGAAAATTTGCATCCTCACATGGCACTGTTAATTTTAAGCATAATATTTCTGTTAACAAATCTTAATTATTCCAGTGTAGTATTCTGTTGTGAAGTGAGATTATTACTTGTGTGTTTTATAGTTCAACTATAAACTATAGTTCAACTATAAACTATGGGTAGGGCTCCTAGGACACTGATGATGTAGTATTTTTATAGCTAGACTTGTGGAGTTCATGAGGACGTGCAGGGACCAGAAAGTTTGGAAGGGATGTGAAAGATTCAGATGTCAGTTATTAGGAAGAGAGATTTGGCAATTAGAAAGCAAAGAACTGGATGGAAAGTGGTGGAAAAACTGAGTGGCTGTTCCATGAGGAACTACTCTGAAGGAAAGCATTTGTAAGCTCTTGTTTTATTTTCAATGCCTTGCTGTAG
Seq C2 exon
GTTCCCTATAACATCATTGGGTGGCTTGAGAAGAACAAAGACCCACTTAATGAAACTGTAGTAGGTATTTTCCAAAAGTCGTCCAACAAGCTCCTGGCAAGCCTGTTTGAAAGCTACGTTGGTGCTGACAGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000015358:ENSGALT00000036887:15
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.150 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(8.6=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(6.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCACTAGGAATCCTGTCTATCCT
R:
CTGTCAGCACCAACGTAGCTT
Band lengths:
311-1524
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]