HsaINT0107632 @ hg38
Intron Retention
Gene
ENSG00000144821 | MYH15
Description
myosin heavy chain 15 [Source:HGNC Symbol;Acc:HGNC:31073]
Coordinates
chr3:108463111-108464814:-
Coord C1 exon
chr3:108464638-108464814
Coord A exon
chr3:108463244-108464637
Coord C2 exon
chr3:108463111-108463243
Length
1394 bp
Sequences
Splice sites
5' ss Seq
GTGGTGAGT
5' ss Score
8.95
3' ss Seq
AAATGCATGCCTTTCCAAAGGTA
3' ss Score
5.21
Exon sequences
Seq C1 exon
CCAATGGGCATCCTTTCCATCCTTGAAGAAGAGTGTATGTTTCCTAAGGCTACAGACCTGACTTTCAAGACCAAACTCTTTGACAACCATTTTGGAAAGTCGGTTCATCTCCAGAAGCCCAAGCCTGATAAGAAGAAATTTGAAGCTCATTTTGAACTTGTCCATTATGCAGGAGTG
Seq A exon
GTGAGTTACCTCTGGACCCCCGGTCTTGAATTTTCCTGACTTTGTTTCAAATGCGCTCAGCCAAAGTCCTTAGATGATATTTAAGTAATGTTTAGATTAAATGAAGAGAAGAACAAAATACATCTCAGTTCCACAAAAAAGGTAGTGTAGCCTTTTAGCACTCAGGAAATGAACAATAGCATTCCATGTGCACAGAGGTCAAAAATCTCCAAATGGACTCTGTCAACCTCAACTCAAAGCAAGGCAGCTTCAGAAAGGCATGGAGACCATCAAAGTCATGGTTTTCCCCCATTTGTCCTTCCTTTTAACTTAACGTTGTGTGAATGAATGATTTCAGTTGATCTTTTTGTTGAAGATTTTTTTATTCTCCCGTAAAGAAATAGTCAATGTGAAGTAATGGTCTCCAAACTATGGCCAAAAACGGTTTCTAATGACCCTTGCTACCTCTCCTCATTTCCTCACCAGTGTATATGCCCCTTTTTCTGCATTTCTACTTCTGGCTGGTGACTCTGGTGGAACAAAAAGAGAATTGATAAAAGATAAAATAATACTTCGACCTAAAAATGGCCTGCCAGCTGTACACAGATATGTTTATAGTTCTCTTCTTTGATATCCTGGCATATTAATTATAATGATATATACAGTAAAATACCATTGCAATTGCTGGTTTTTTTTTTGAATGTTCACTGTATGTCAGAGACAGTTGGATTATTTCACCATTCTTGCCTTTAAAGGACTGCTGGTGTGAAATGCCATTCAATCCTTCCTTCCTCTCTGTTGCTCTCTCCCCCCTTTCTTTTCTCTCCTCTCTTCTACTTCTTCCCCTATCTCTCTCCCTTCTTCCCTTCCTGTCTGTTCCTTTCTTTTGACAATGTTAATGATAAGAATCTTGAGAATCTTTCTGGGCTGCACAATGGGCTTTTGGAGGTTATTCTGTACTATTACATTAAACTGATTTAAAGGTAAAGGACCCATATAATTTGTGATTTATTAAAAGTAATGCAAAGGCTGGGCATGGTGGCTCCCTGTAATCCCAGCACTTTGGGAGGCTGAGATGGGTGGATTGCTTGAGCCCTAGGAGTTTGAGACCAAACCGAGCAACATGTGGAAACCAAATCTCCACACATACACAAAATAAATAAAAATACAAAAAAAATTAGCCAGGCATGGTGGCATGTGCCTATAGTCCCAGCTACTCTGGAGGCTGAGGGGGAAGGATTGATTGAGACCAGGAGGTCGAGGCTACAGTGAACTGTGACTATGCCACTGCATTCTAGCCTGGATAACAGAATGAGACCCTGTCTCAAAAAAAAAAAGGGGTAATGCACAGCCTTCCATGTTAACTTATGCAGTTTTTTTTCTTTTTTTAACCTGAAATGCATGCCTTTCCAAAG
Seq C2 exon
GTACCTTATAATATCAGTGGTTGGCTGGAAAAGAACAAAGACCTCCTTAATGAAACAGTGGTAGCTGTATTTCAGAAGTCTTCCAACAGACTCCTGGCGAGCCTTTTTGAAAATTACATGAGTACTGACAGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000144821:ENST00000273353:16
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(8.6=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(6.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAATGGGCATCCTTTCCATCC
R:
CACTGTCAGTACTCATGTAATTTTCA
Band lengths:
310-1704
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development