BtaINT0097230 @ bosTau6
Intron Retention
Gene
ENSBTAG00000018399 | MYH15
Description
myosin, heavy chain 15 [Source:HGNC Symbol;Acc:HGNC:31073]
Coordinates
chr1:53618692-53619844:-
Coord C1 exon
chr1:53619727-53619844
Coord A exon
chr1:53618816-53619726
Coord C2 exon
chr1:53618692-53618815
Length
911 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAAC
5' ss Score
8.14
3' ss Seq
TTATTCTTTACTTAAATTAGGTA
3' ss Score
6.81
Exon sequences
Seq C1 exon
GTGTAATGGACCCTTATTTGGTTCTACAGCAGCTGCGCTGTAATGGTGTCTTAGAAGGGATCACGATATGCCGTGAAGGTTTTCCACACCGACTGCTGTATGCTGATTTTAAGCAAAG
Seq A exon
GTAAACATACATCCTGGGATTCAAGAAGCCTGGAGCATTTCTTTTTCCCCCTTCTCTTTCTGAGTGCTTAGGCATGCATTGTTTGTTTGGTGGATATCCTCCAGACTACAGATCGATGTGTTTTGGTGGTGGTGAGATATATGATGACAGAGTTCCATTATTATTTCCCCTTAAATCCAACATCCATGTAGCTGTAATATCCTTAAATCTCTATTACTGGATAATAGACCCACATATAGAAGAAATATATAGAGAAGAACGATACAGAGGCTGAATTGAATCTCTGAAATGTTGTTGGTACTTAATCGTAGCTGCCATCCAAGCGGGCTGTTTCTTTCCTAGCAGAGCCTGTGAAAGGCAGAAAGCCAGCAGGGTATGCGGCAGGAGGCAAGAGAGGTATTTTTGCTTTCTATTTCCTGAATTCTCAAAGTGTCAATTATAAGTCATCAAGCTAATTTGAGCAAAGTATAGTAGAGTAGAAAGAGTACCTGTGTCAGTATTAAGAAGCATATTTCTAGCTCTCCACCAACTCACCATTACTACGAGGAAATCCTGGGAAAGTTCTTTAATGTCTCTGCTTCTCAGTGTCCTTATCTGTACTTAGAGACACTTAAGCCTGTCTCTTTGTCTTTCCTCTGATCCCTACTCCACTCTCCCGCTCCTTCCTCTTGAGCATAAAATCAAGTGAGGTGGTCTTGACAGCACTATGAAAAGTATAAACTATTATACCAAAGGAAAGAATTATTGCTTGTATCCTCATTATTATTGCCAAGAGTTTTGTGAAAATTGAACATATTGATAGGAGAGGTGGAAGTTTATATATATATAGACACACTTCCCTTTGCCTTACTTGTCCAAATTATTCTTTATATGCACCCCTGACCTCAGGATTTATTCTTTACTTAAATTAG
Seq C2 exon
GTACTACATTCTGAACCCAAGGGTGTTTCCAAAGAGCAAATTTGCAAGCAACAGAAAAGCAGCTGAAGAATTACTTGACTCCTTAGAGATAGACCATACCCAGTACCGCTTTGGAATCACTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000018399:ENSBTAT00000032372:20
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(5.8=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(6.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGTAATGGACCCTTATTTGGTTCT
R:
AGTGATTCCAAAGCGGTACTGG
Band lengths:
239-1150
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development