GgaINT0119189 @ galGal4
Intron Retention
Gene
ENSGALG00000015358 | myosin
Description
myosin heavy chain, cardiac muscle isoform [Source:RefSeq peptide;Acc:NP_990097]
Coordinates
chr1:86902137-86902610:-
Coord C1 exon
chr1:86902493-86902610
Coord A exon
chr1:86902261-86902492
Coord C2 exon
chr1:86902137-86902260
Length
232 bp
Sequences
Splice sites
5' ss Seq
AAGGTAATG
5' ss Score
8.99
3' ss Seq
TGCTCCTCTGTTGTTAACAGGTA
3' ss Score
9.78
Exon sequences
Seq C1 exon
GTGAAATGGATGCTTTCCTTGTCTTGCATCAGCTCCGCTGTAATGGTGTCCTGGAAGGCATCCGCATTTGCCGTAAGGGTTTCCCAAACAGAGTGCTTTATGCTGACTTTAAACAAAG
Seq A exon
GTAATGCAGAGCTGTGTTGTCTCCCGTTTTGTCCCAGCAGACAAAATAAGAAAAGCATGCCTTCTCATTTTTATTGGAGATGTTTTATTCCACTCCAGTTTATTTTCCATTCTGCTTGCCTGAAAAATGGAAGGCAGAACTCTGTTCTTGCCTGTGACTTTGTAGATGCAAAGTAGGAAATTAGTCCAGGCCATTATGCTAGTTTTATTCGTTGCTCCTCTGTTGTTAACAG
Seq C2 exon
GTACCGCATTCTGAACCCAGGTGCAATCCCAGAGGACAAGTTTGTGGATAGCAGAAAAGCTGCCGAAAAACTACTGGCATCTTTAGATATTGACCATAACCAATATCGTTTCGGGCATACTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000015358:ENSGALT00000036887:20
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(5.7=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(6.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAATGGATGCTTTCCTTGTCTTGC
R:
AGTATGCCCGAAACGATATTGGT
Band lengths:
236-468
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]