GgaINT0119189 @ galGal3
Intron Retention
Gene
ENSGALG00000015358 | Q91377_CHICK
Description
NA
Coordinates
chr1:90798624-90799097:-
Coord C1 exon
chr1:90798980-90799097
Coord A exon
chr1:90798748-90798979
Coord C2 exon
chr1:90798624-90798747
Length
232 bp
Sequences
Splice sites
5' ss Seq
AAGGTAATG
5' ss Score
8.99
3' ss Seq
TGCTCCTCTGTTGTTAACAGGTA
3' ss Score
9.78
Exon sequences
Seq C1 exon
GTGAAATGGATGCTTTCCTTGTCTTGCATCAGCTCCGCTGTAATGGTGTCCTGGAAGGCATCCGCATTTGCCGTAAGGGTTTCCCAAACAGAGTGCTTTATGCTGACTTTAAACAAAG
Seq A exon
GTAATGCAGAGCTGTGTTGTCTCCCGTTTTGTCCCAGCAGACAAAATAAGAAAAGCATGCCTTCTCATTTTTATTGGAGATGTTTTATTCCACTCCAGTTTATTTTCCATTCTGCTTGCCTGAAAAATGGAAGGCAGAACTCTGTTCTTGCCTGTGACTTTGTAGATGCAAAGTAGGAAATTAGTCCAGGCCATTATGCTAGTTTTATTCGTTGCTCCTCTGTTGTTAACAG
Seq C2 exon
GTACCGCATTCTGAACCCAGGTGCAATCCCAGAGGACAAGTTTGTGGATAGCAGAAAAGCTGCCGAAAAACTACTGGCATCTTTAGATATTGACCATAACCAATATCGTTTCGGGCATACTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000015358:ENSGALT00000036887:19
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(28.5=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(29.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAATGGATGCTTTCCTTGTCTTGC
R:
AGTATGCCCGAAACGATATTGGT
Band lengths:
236-468
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]