BtaINT0097231 @ bosTau6
Intron Retention
Gene
ENSBTAG00000018399 | MYH15
Description
myosin, heavy chain 15 [Source:HGNC Symbol;Acc:HGNC:31073]
Coordinates
chr1:53615675-53618815:-
Coord C1 exon
chr1:53618692-53618815
Coord A exon
chr1:53615708-53618691
Coord C2 exon
chr1:53615675-53615707
Length
2984 bp
Sequences
Splice sites
5' ss Seq
AAGGTAACC
5' ss Score
9.24
3' ss Seq
ACATCTGACATTTCTTTTAGGTG
3' ss Score
10.64
Exon sequences
Seq C1 exon
GTACTACATTCTGAACCCAAGGGTGTTTCCAAAGAGCAAATTTGCAAGCAACAGAAAAGCAGCTGAAGAATTACTTGACTCCTTAGAGATAGACCATACCCAGTACCGCTTTGGAATCACTAAG
Seq A exon
GTAACCAGAGAACCACAAAGAATGCATTTGGAAAAGAGTGGGAGGAAAATCTGTATATCTGAAAATACCCATGAAAATGCAATTATAAGGCTTTTACAGCTCTTGTGACCACAAATAATACAAATAGAACTCTGTTGAGAGTGAAAACTTTGGCTATGTTGAGAGAGAAAATTTGAAAGTCAATGCTTTTTGAAACTTAGCCTTGATTACATTGTTTTGCTCTATCATTTTTATATATTTATTTTTAATTGGAGGATAATTGCTTTACAATATTGTGTTGGTTTCTGCCATATATCAACATGAATTGGCCATAGGTATATGCATGAGATGGTTAGGTAGTATCACTCAATGGACATGAATTTGAGCAAACTCTGGGAGATAGTGAAGGACAGAGAAGCCTGGTGTGCTACAAGTCCATGGGGTTGCAAAGAGTCAGACACGACTTAGTGACTGAACACACACATATATATGTCCCCTCCTTCTTGAACCTCTCTCCCACCTCCTACCCCATCGCACCCCTCTAGGTTGTCTCAGGGCACAGGATTTGAACTTCCTGCATCATACAGCAAGTTTCCCTTGGCTATCTAATTTTACCTATGGTAAAGTATATGTTTAAGTGCTACTCTCTCAATTCAGCCCACCCTCTCCTGCCCTGACTGCATCCACAAATCTGTTCTCTCTGCATCTCCTTTGCTGCCCTGCTGTAGGTTCATCAGTTCTATCTTTCTAGATTCCATATATATGCGTTAATATACTATATTTGTCTATCTCTTTCTGACTTAACTTCACCCTGTATAATAGGCTCTAAGTTCATACACCTCATTAGAACTGAGTCAAATACATTCCTTTTTATGTCTGAGTAATATTCCCTTGTGTACAACTTCTTTATTAATCTCTCTGTCAATGGACATCTAGGTTGCTTCCATGTTCTAGCTATTGTAAATAGTGCTGCGATGAACATTGGGATACATGTGTCTTCTTCAATTATGGTTTTCTCAGGGAATATGACCAGTAGTGGGATTGCTGGGCTATATGATAATTTCATTTCTAGTTTTTTAAGGACTTTCCATTCTGTTCTCCATAGTGGCTGTATCAATTTTCATTCCCACCCCAAAAGAGGGCTCCCTTTTCTCCATACCCTTTCCAGCACATATTGTTGGTAGATTTTTTAATGATGGCCTTGATTATATTTAGTAATACATCTTTATAATTACTTATCTAAGCAAGTTTGTGCCAAGATATAAAATAATTAATCAACTTTAGGGTGATAAAAAATGTTTATATACATCAGAGCTAGACAAAATTGAATCAACTTACTGGAGATAACTGCCTGTCTGCATGTGAACAGATTCATCCATAAGTATGCTCTCAGGAAATTAATTCTGAAAGACTGCCTGAGTAACTAAAAACAGTAAAATCAACCCTACTATCCAAAACGTTAGTCCAAAGCTAATTTCCTTAAATTTGATTCACTAAATTCTGCTTCATCTTGGAGATTTTGGCAGATCCACATATTTTGGGAAACCGCTAACACATTTGGTTTTCACCTGACAGTGTCAGGGTGTTTCTAATGACATCCATGTGTTAAGTTGCTTTAGTTATGTTTGACTCTTGTGACCCCGTGGACTGTAGCCTGCCAGCCTCCTCTGTCCATGGAGTTCTCCAGGCAAGAATACTGGAATGGGTTGCTATTTCCTTCTGGGGATCTTTCTGACCTAGGGATCAAACCCGAGTCTCCTGTGTCTCCTGCATTGCAGGCAGATTCTTTACTGCTGAGCCACTGGGAAAGCCATAAAAGGGCCAGGTTATTTAAAGGAGAATTGGAGGATGTATGATAAAGAGCTTACAGAAAAAGAAATCTGTTGGACATGCTTATAAAATGTTACTCAACTCCTACATTTTGAGTACCTGTTTCTGCTGATTTTTACTCCTGGTACCTTGCTTCCTTGTATGTTTAGTTATTTTTGTTGTGTACTGCTTACCTAGGCTAGGACTATTATGAGTTGAGGGGCTTCCCAGGTAGCACTAGTGGTAAAGAATCCACCTGCCAATGCAGAAAACTTGAGTTTGGTCCCTGGGTTGGGAAGATCCCTTGGAGAAGAGCACGGCTACCCACTCCAATATTTTTGCCTAGAGAATCCTATGGACAGAGAAGCCTGGTGGTCCATAGGGTCACAAAGAATCCAACATGACTGAAGTGACTCAGCACACAACATAAATTGAGAGCCTCCTGAAGCACAAAATCTGAGGCAGCACTCACTTGTGGTGTAAGTACTGACTTGTACAACCCTGAAAGTGAGTGCTGCCTTAACATTTGTGCTTTAAGTACCTCACTCACCTCATCCTGACCCTTACTAATGATTCTTAAAAAAAAAAAATTATGTGTATTTTTTTTTATCGTCTAAGATGAAGGTGACTTTCTCTAGAGCAGTTGTCAGCAAACTATGGCCTAAGGGCCATATCAATGGCCTATTTTTTATATGGCCCCCTTGCTAAAAATGATTTGGCATTTTTAAAGAGGAAGAAAAATGAAAAAAGAGGAGGAGGCACAGGTAGAGGAGGTGGGGAGAAGGGAGGGAGTGGATGTGGGAGTAGAGGTTCTACAGAGACTGAGTATGGCCTGCAAAGCCTAAAAATTTTCACTATCTGGCACTTTACAGATAAAGTGTGCAGACCCCTGCCTGGGCCTAGCTTCAAATTAAAACCAAGTTCCTTAAACAACCTAGACATAGCTAATAGATTGGGAGGAGGACAGTCTAAGTTCTTAAGGAACTAATACAACCACAGGATTAAATGAAGTTTTTTGCTTTGGCAAGCTTTAGGTTTATAAAACCAAACTTTCTAGAATGTACATTTTACACATTATGAAAAATTAACAAGAAATAGAACTGATCATCAAATACATTAGTTGCTCATATGGCCATTCAATAGACATTTACTGAATGCCCACTAGGACTGGAACTGACATCTGACATTTCTTTTAG
Seq C2 exon
GTGCTTTTAAAAGATGGCTCTCTGAGCAAACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000018399:ENSBTAT00000032372:21
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(6.1=100)
A:
NA
C2:
PF0006316=Myosin_head=PD(0.4=27.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development