GgaINT0119190 @ galGal4
Intron Retention
Gene
ENSGALG00000015358 | myosin
Description
myosin heavy chain, cardiac muscle isoform [Source:RefSeq peptide;Acc:NP_990097]
Coordinates
chr1:86901335-86902260:-
Coord C1 exon
chr1:86902137-86902260
Coord A exon
chr1:86901472-86902136
Coord C2 exon
chr1:86901335-86901471
Length
665 bp
Sequences
Splice sites
5' ss Seq
AAGGTAACC
5' ss Score
9.24
3' ss Seq
GGCATCTGTGCGTGTACCAGGTG
3' ss Score
6.3
Exon sequences
Seq C1 exon
GTACCGCATTCTGAACCCAGGTGCAATCCCAGAGGACAAGTTTGTGGATAGCAGAAAAGCTGCCGAAAAACTACTGGCATCTTTAGATATTGACCATAACCAATATCGTTTCGGGCATACTAAG
Seq A exon
GTAACCAGAAAAATATCGTTAATGAATGTGTAAAGAGAAAGGCAGTGAATCTAATTTGCAGAATAGGACACTATGCAACCCCTGGTCATGTCAGTTAATGGGTTACTAATACAGGAACTAGCAGCATAGCAGAAAACAGAAATTAATTTTAAACTGTGCTAGAGAAATATTATTTTTCTAGCTTAAGCTCCCACAAAGCTTGTATTGCAGCAACAGTACAAACACAAGAGCAGCTGATGCTCCGTACTCCCTAGTAAAATACTAGCTTGTTTGGACCATAAGATCAGCAGCAGCTTTTTTAATGAAGCTGTGTGACATGATCCCATTAGCAGGGACCTTACAGTGGGCAGTTGTGGTTTAGCTGACCTGTACTGAACTCTGTCACAGCTGAAATGCACCATAGAGCATGTCAGTAAAACAGTTTGGCTTATTCAAAACTGGGAAGATGAGACCTAGTTTTAAAGAAACTAGAACAGTGCAGTCCCTGATGAAAGTACCTTATTTCTTATTAATGCAAGTATCATCTTATTTCTTTTGCTTAATAAATGTGCCAATAAAATTACCATTTTTCTGAACAATTACAACAAAGTCTGTACAGCTAACTGTTGGTGTACTTTGGAAGAAAATTAATCATTATCATCAAATGGCATCTGTGCGTGTACCAG
Seq C2 exon
GTGTTCTTCAAGGCTGGTCTGTTGGGCCACCTAGAAGAAATGAGGGATGAGAGACTTGCAAAGATCCTAACAATGATCCAGGCAAGGGCACGTGGCAGACTGATGAGGATCGAGTTCCAGAAGATAGTGGAGCGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000015358:ENSGALT00000036887:21
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(6.0=100)
A:
NA
C2:
PF0006316=Myosin_head=PD(0.4=6.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTACCGCATTCTGAACCCAGG
R:
TGCGCTCCACTATCTTCTGGA
Band lengths:
260-925
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]