RnoINT0096434 @ rn6
Intron Retention
Gene
ENSRNOG00000061038 | Myh15
Description
myosin, heavy chain 15 [Source:RGD Symbol;Acc:1565858]
Coordinates
chr11:54280606-54283284:-
Coord C1 exon
chr11:54283161-54283284
Coord A exon
chr11:54280743-54283160
Coord C2 exon
chr11:54280606-54280742
Length
2418 bp
Sequences
Splice sites
5' ss Seq
AAGGTAACC
5' ss Score
9.24
3' ss Seq
GTCTGATTGACTTCTTTTAGGTG
3' ss Score
8.5
Exon sequences
Seq C1 exon
GTACTGTATTCTAAACCCAAGGATCTTTTCGAAGAGCAAGTTTGTGAACATCAGAAAGGCAACTGAAGAAGTACTTGCCTTGTTGGAGATAGACCAGTCTCAATACCAGTGTGGAGTCACCAAG
Seq A exon
GTAACCCAGAATGTCCAAGAATGCATTTGGAGGGAAGTGGGAGGAAAGGGTGTGTATTTAAAAATTTAGGTCAATTCTTAATTATTAAATAAGCTCTTTAGTTCTTGTGAAGAGAAATAATAAAAATAGAGACAAACTCACAGTGGAAACTTCAATTCTGTTAGAGAAAGAAAATCCATGTTTACTTAAACAAGTCAAGATTTAGTTTACATTATTTATTTCAGTCTTGAGGGTTAAATCTAGGACCTTGAACGATCTAGGCAAGAACACTGTAACTGAACTACACTCTGTATTGCATATAAATTTGTATAACTAATTGTCTAGTCAAAATTGTGTCAATATATAAAATACTGAACTGACCTTTCTGTGCTAGAAAACAGAGAGTGTAAATCAGGTTCTCAGAGATAATGCTTGCCTATGTGAAATGTCTTATGGAGTGGGCTGCACTGGAAAAATGTATTACTTGAATAATTTAGTAATTAAAAAATCAATTATAAACCAAACCCAACTTATTTAAAACATGATCGTGTAAATTCTACTTTACCCAAGAAACCCAGGTTTTTGGGTAATAAGTTTGATCTTATGTAGTAGTCAATACCATGTTGTTCTTAATGACATCCGTGTAAGAGTAATTTTTTGAAGGAGAATGGGAGGATCCAGGTTGAAGAGTTATCCATCTGTCTAGTTTTTGTCTATCCATCCTCCCTGAGCTTGTCACCTCATCCTTCTGCCTCTGCCTCCTGATTTGCTAGGATTCTAAGTACACGTAAACAAACCTACCCCTGAAGTATAGTTTTATGAATATTACTTGCTTTTTTGAATGTTACTTATATTTTGAGTAACTAGGAATCCTGTGTATCATCTGTGGTCTCTTCTTTATAGCTCATTATTTTCGCCACATGCCACCCATCAGGGCTAAAGCTCACATGAGCTAATGAGAATCCTAAGTGACTGACGTTTAGGAGGGTTTCATCATAGATGGGCAAACGAAAATGAGAGGGACCTATGACAAGAAGGGACATATTTTAAGATTCACTTTCACAGTTTTTCAAGGCACATCTAAGAAGGACCACATGATTTCTTCTATGAAATTTGTGTCTTAGGTAGCTATTCACCTCACCTTTGTTCTTACTGATTACTCTCAGGAAATGTCAAGTCTCTCACGTGTAGGACAAAAGTATCTTCTAGTGCATTGGTCAGTAAACTATGGTGCAACAACTATATGGCTGGTTTATAAATCACTTCTGGAATGCTTATATCCCAACTAGTACCACATTCTTTTATGCTTAGCTGGTTTCTGTGATTTCTCCATGCTGCATACTCACATTGTAGAATGTGGAGCTAAGAACTGCCGATGAGAGACAACGTGTGACTTTTGTCTTCCTGGATCTGGGTTACCTCACTCAATATAATCTTCATTAGGTCCACCAATTTTCCTACAAATATCATGATTTCATTTTTCTTTATAGCAGAATAGTATTCCATTGTGGTATGCATCGCACTTTCGTTATCCACTCATCTGCTGAAGGACATTAGGGTTCTATTTCCCTGGACAGTAATATCAATGGACATTAACACAGGATGTATAATTTCATGGGGTCCCACTCTTAGCCAAAGAACCACTGGCAACTAAAGACTGAGGAGAATTAGGCTCTCCTAATTATGTATTTGTGAGTGTGCATGTACACACACATGGGTGCACACACAGGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGGAGGGAGAGAGAGAAGAGAGAGAGGCAGAGAGGGAGGGATGGAGGGAGAAGGACAGGGAGAAGGACAGGGAGAGGGAGAGGGAGAGGAAGAGGGAGAGGAAGAGGGAGAGGGAGAGAACTAAAATATGCTATCAGTTTGGAGGAGAAACTTGGGAAAGATTCAAAAGAGGATAGCTAGAAGGAAAGGCATCTGATTTTATTTCGATTAAACTATATTGAATAAACCACTTTGAGCATACTAAAATCATTTTATATTTAGAAAAGCAAACAAGTATTCAACACAACTGTTTATGAGTCACCATCCCAGAAATGTTTTTTGCTCTGTCCCTCACAGAGATAGCTGTGGACTGTGCCACATCCTTTGGAGTGCTGGGTACCCGAGCCCATTTTAAAAGTTAGATCATGTTCTTCAAACATAATTATTATTAATCAAGGGGAAGTACAGAGGAATGAGCACAGGTTGTCAATGTGTCCAATATACAATGTCCTTTATAACCTTCAGAGTTAAAACATGACATTCCTTAGGATTTAAATTTTACACAATGAATGAACACGTGCAAAGACATAGGATTGGTTCAGCTCTCCCGGAGACTAACTTCAGTTGTTCGTGGCATCTTTCAAAAGACTGCTGAACTCATCTGATGAGTGACATTGTGTCTGATTGACTTCTTTTAG
Seq C2 exon
GTGTTTTTTAAAGCTCGCATTCTGGACCGGTTAGAAGAAAGAAGAGATGAAAAAATATCTAAAGTCTTCACTTTGTTCCAAGCCAGAGCACGAGGAAAGCTGATGCGCATTACATTCCAGAAGATTCTAGAAGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000061038:ENSRNOT00000090307:21
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(6.1=100)
A:
NA
C2:
PF0006316=Myosin_head=PD(0.4=6.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]