BtaINT0097235 @ bosTau6
Intron Retention
Gene
ENSBTAG00000018399 | MYH15
Description
myosin, heavy chain 15 [Source:HGNC Symbol;Acc:HGNC:31073]
Coordinates
chr1:53599383-53608485:-
Coord C1 exon
chr1:53608230-53608485
Coord A exon
chr1:53599626-53608229
Coord C2 exon
chr1:53599383-53599625
Length
8604 bp
Sequences
Splice sites
5' ss Seq
GCTGTGAGT
5' ss Score
7.39
3' ss Seq
TTTTCTCCTCATCATGGCAGGAG
3' ss Score
7.54
Exon sequences
Seq C1 exon
GGATGCACTTCTTTTGATCCAGTGGAACATAAGAGCTTTCATAGCTGTGAAGAGCTGGCCTTGGATGAGGCTCTTCTTCGAGATCAAGCCTCTTGTTAGATCTGCTGGAATGGGAAAGGAGGGAGCTGGACTGAAGGAAGAGTGTATGCAGCTGCAAAAAGCCTTGGAGAAGTCAGAATCTCAGAGGGAGGAGCTGAAATCAAAGCAAGTCTCCCTCCTCCAGGAAAAGAATGATCTGCTTCTTCAGCTGCAGGCT
Seq A exon
GTGAGTGGCCCCGCCATTTCTTCTTCAAATCAAGTTTCTAATTAGATTCCCTTGTTTGGCAGGCAGTGTTGACTTGAAAAAATAGAGACACGTGCTTTTTGAGTACTATAGGATTTCATCCAACACAGACAATGGAAACACTTAAGGAGACACCCTGTTTTATAGTGAAGTGATTTCATTGGGAAGATGCCTTTGAAAAGGGGATGGATTTTATTAGATAGATTTTAAACTGTGTAAACATATAAATCTATCTTGGGAGCCAGGAAGCTCTTGATCTTAATTTAAATTCTGTAGGTAGCAGGAAACCCATTAGTAAATCAAAAGGTAGGATTTTAGTAGGTCCTGAGAAAAGCTTTACTGAGATCTTCAGGATTATTGCAGTATGCCCCTAACTGGTTTTCCTGATTTTGATCTCCCTATTTGCCCTTCCCCAGTCCAAATCAACATTATAATCAGTTGAGTTCTTAAAACAGCAGTATTCAACCTTGACTTTGCCTCAAACTCATTTGTGAAACACTAGCAATTAAAAGAAAGATGCCTAGACTTGAATCTCAGATATTTGGGTTAAACAGGCCCTGTGTGGGTCCAAATCATCTGTATGGGGGATTCTGATATCCAGTCAGGATTAAGAACCTCTGCCTTGAACAAATATCATGTTGCTTCCCTGATGAACAAACTTCAGATCAAAGAATATCTGAACTCGGCCTTGGCATCTGAGCCTCCTTCCCCAATCTGATGCTGAAGTGCCATTCAGTTCAGTTCATTTCAGTCGCTCAGTCGTGTCCAACTCTTTGCAACCCCATGGACTGCAGAACACCAGGCTTCCCTGTCGATCACTAACTCCTGGACCCTACTCAAACTCATGTTGATGGAGTCAGTGATGTCATCTAACCATCTCATCCTCTGTCATCCCTGTCTCCTGCTGCCTTCACTTCTTCCCAGCATCAGGGTCTTTTCAAATGAGTGAGCTCTTCGCATCACATGGCCAAAGTATTGGAGTTTCAGCTTCAGCATCAGTCGTTCCAATGAACATTCAGGACTGATTTCTTTAGGATTGACTGGTTGGATCTCCTTGCAGTCCAAGGGCCTCTCAAGAGACTTCTCCAACACCACAGTTCAAAAGCATCAATTCTTCAGAGCTCAGCTTTTCTTTATAGTCCAACTCTCACATCCATACATGACTACTGGGAAAACCATAGCTTTGACAAGATGCACCTTTGTTGGTAAAGTGATGTCTCTGCTTTTTAATATGCTGCCTAGGTTTGTCATAGCTTTTCTTCCAAGGAGAAGCATCTTTTAATTTCATGGCTACAGTCACCATCAGCAGTGATTTTGGAGCCCCCAAAAATAAAGTCTGTCACTGTTTCCACTGTTTCCCCATCTATTTGCCAGGAAGTGATGGGACCAGATGCCATGATCTTAGCTTTATGAATGTAGAGCTTTAAGCCAACTTTTTCACTTTCCTCTTTCACTTTCATCAAGAAGCTCTTTAGATCTTCTTTGCTTTCTGCCATAAGGATGGTGTCATCTACATATCTGAGGTTATTGATATTTCTCCTGGCAATCTTGATTCCAGCTTGTGCTTCATCCAGCCAGGCATTTCACATGATATACTCTGCATGTAAGTTAAATAAGCACGGTGACAATATACAGCCTTGACATACTCCTTCCCTGATTTGGAACTAGTCTGTTGTTCCATGTCCTATTCTAACTGTTGCTTCCTGACCTGCATACAAATTTCTCAGGAGGCAGGTCAGGTGGTCTGGTATTCCCATCTCTTTAAGAATTTTCCAGTTTGTTGTGATCCACACAGTCAAAGGCTTTGGTATAGTCAATAATTCAAAAATAGATGTTTTTCTGGAACTCTTTTGCTTTTTTGATGATTCAGTGAATGTTGGCAATTTGATCTCTGGTTCCTTTTCTAAATCCAGCTTGACTATCTGGAAGTTCATGGTGCACATACTATAAAAGCCTGGCTTGAAGAATTTTGAGCATTACTTTGCTAGCATGTGAGATGAGTACAATTGTATGGTAGTTTGAGCATTCTTTGGCATTGCCTTTCCTTGGGATTGGAATGAAAACTGACCTTTTCCAGTCCTGTGGCCACTGCTGAGTTTTCCAAATTTGCTGGCATATTGAGTGCAGCACTTTCACAGCATCATCTTTCAGGATTTGAAATAGCTCAACTGGAATGCCATTACCTCCACTAGCTTTGTTCGTAGTGATGCTTCCTAAGGCCCATTTGACTTCACATTCCAGGATGTCTGTCTCTAGGTGAGTGATCACACCATTGTGGTTATCTGGGTCGTGAAGCTCTTTTTTGTACAGTTCTTCTGTGTATTCTTGCCACCTCTTCTTAATATCTTCTACTTCTGTTAGGTCCATACCATTTCTGTCCTTTATCGAGCCCATCTTTGCATGAAATGTTCCCTTGGTATCTCTGATTTTCTTGAAGAGATCTCTGTCTTTCTATTGTTTTCCTCTATTTCTTTGCATTGATCCCTGAGGAAGGCTCTCTTATCTCTGCCTTGTATTCTCTGGAACTCTGCATTCAGATGGGTGTATCTTTCCTTTTCTCCTTTGCCTTGCCCTTCTCCTCATTTCACAGCTATTTGTAAGGCCTCATCAGACAATAATTTTGCCCTTTTGCATTTGTTTTTCTTGGGGATGGTCTTGATTACTGTCTCCTATACAGTGTCACAAACCTCCATCCATAGTTCTTCAGGCACTGTGTCTATCAGATATAATCCTTTGAATCTATTTGTCACTTCCACTGTATAGTCGTAAGGGATTTGATTTAGGTCATACCCGAATGGTCTAATGGTTTTCCCTACTGTCTTCTATTTAAGTCTGAATTTAAGTCTGAGACAGAACTGTGTTGAGTGTCTCCTGAGGAGGTCTGGGTCAGCAGTGGCCTGCTGCAGGGGCAGGGGCTCTGGGTGCAGTAGACCTGGGTATGGCATAAGCCCTCTTGGAGGAGGTCACCATTAACCCACCATAGAGCCACCAGAACTTACACAGAACTGGGGAAACAGACTCTTGGAGGGCACAAGCAGAACCTTGTGTGCACCAGGACCCAGGAGAAAGGAGCAGTGACCCCACAAGAGACTGACTCAGTCTTGCCCGTGAGTGTCCAGGAGTCTCTGGCAGAGGCATGGGTCAGCGGTAGCCTGCTGCAGGGTTGGGGGCACTGAGTGTAGCAGTACATGCATGGGACCTTTCGAAGGAGGTGGACATTATCTTCATTACCTCCACCATAGTTTGCCTCAGGTCAAATAATAGGGAGGGAACACAGCCCCACCCCTCAACAGAAAATTGGATTAAAGATTTACTGAGCATGCCCCAATAAAGTAAAGTAATGCTCAAAATTCTCCAAGTCAGGCTTCAACAGTATGTGAATCCTGAAATTCCAGATGTTCAAGGTGGATTTAGAAAAGGCAGAGGAGCCAGAGATCAAATTGCCAACATCCATTGGATCATCAAAAAAGCAAGAGAGTTACAGAAAAACACCTACTTCTGCTTTATTGACTATGCCAAAGCCTTTGACTATGTGGATCACAACAAACTGTGGAAAATTCTGAAAGAGATGGGAATACCAGACCACTTGACCTGCCTCCTGAGAAATCTGTGTGCAGGTCAGGAAGCAACAGTTAGAACTGGACATGGAACAACACACTGGTTACAAATAGGGAAAGGAGTACATCAACGCTGTATATCGTCACCCTGTTTATTTAACTTATATGCAGAGTACATCATGAGAAACACTGGGCTGGAGGAAGTACAAGCTGGAATCAAGATGGCTGGGAGAAATATCAATAACCTCAGATATGCAGATGACACCACCTTTATGGCAGAAAGCAAAGACGAACTAAAGAGCCTCTTGATGAAAGTGAAAGAGGAGAGTGAAAAAGTTGGCTTAAAGCTCAACATTCAGAAAACAAAGATCATGGTATCTGGTCCTATCACTTCATGGCAAATAGATGGGGAAACAGTGGAAACAGTGACAGACTTTATTTTTGGGGGCTCTAAGATCACTGCAGATGGTGGCTGCAGCCAAGAAATTAAAAGACCCTTTCTCCTTGGAAGAAAGTTGTGACCCACCTAGACAGCATATTAAAAAGCAGAAACATTACTTTGCCAACAAAAGTCCGTCAAGTCAAAGCTATGGTTTTTCCAGTAGTCATGTATGGATGTGAGAGTTGGAGTATTAAGAAAGCTGATTGCCAAAGAATTGATGCTTTTGAACTGTGGTGTTGGAGAAGACTCTTAAGAGGCCCTTGGACTGCAAGGAGATCTAACCAGTCCACCCTAAAGGAGATCAGTCCTGAGTATTCATTGGAAGGACTGATGCTGAAGCTGAAACTCCAATACTTTGGCCACCTGATGTGAAGAACTGACTCATTTGAAAAGACCCTGATGCTGGCAAAGATTGAAAGCAGGAGGAGAAGGGGACGACAGAGGGTGAGATGGTTAAATGGCATCACCAACTCAATGGACATGAGTTTGAGTAAACTCCAGGCGTTGGCGATGGACAGGGAAGCCTGGTGTGCTGCAGTCCATGGGATCACAAAGAGTTGGACAACAAAGGTTCGTCTAGTCAAGGCTATGGTTTTTCCTGTGGTCATGTATGGATGTGAGAGTTGGACTGTGAAGAAAGCTGAGCGCCGAAGAATTGATGCTTTTGAACTGTGGTGTTGGAGAAGTCTCTTGAGAGGCCCTTGGACTGCAAGGAGATCCAACCAGTCCATTCTGAAGGAGATCAGCCCTGGGATTTCTTTGGAAGGAATGATGCTAAAGCTGAAACTCCAGTACTTTGGCCACCTCCTGCAAAGAGTTGACTCCTTGGAAAAGACCCTCATGCTGGGAGGGATTGTGGGCAGGAGGAGAAGGGGATGACAGAGGATGAGATGGCTGGATGGCATCACTGACTCAATGGACGTGAGTCTGAGTGAACTCTAGGAGTTGGTGATGGACAGGGAGGCCTGGCGTGCTGTGATTCATGGGGTCGCAAAGAGTCGAACACGACTGAGTGACTCAACTGAACTGAGCCTGGCTCCGCCTATCAGAATAAAGCCCAATTTCCCCCTCAGTCAGTCTCTCCCATCAGGGAGCTTCCATAAGTTTCTTATCCTTCTCCATCAGAGGCAGACAGACTGAAAGCCACAATCACAGAAAACTAACCAATCTGATCACATGGACCAGCTTTGTCTAACTCAGTGGAACTATGAGCCATGCCGTGTAGGGCCACCCAAGATGGATGGGTCATGGTGCAGAGTTCTGACAAAATGTGATCCGCTGGACAAGGGGATGGCAAACCACTTCAGCATTCTTGCCTTGAGAACCCCATAAACAGTATGAAAAGGCAAAAAGAGGACACTGAAAGATGAACTCCCCAGGTTGGTAGGTGCCTAATATGTTACTGGAGATCAGTGGAGAAATAACTCCAGAAAGAATGAAGAGACGACGCCAAAGCAAAACCTGCATCTAGTTGTCGATGTGACTGGTGATGGAAGTAAAGTCTGATAGTGTAAAGAGCAATATTGCATAGGAATCTGGAATGTTAGGTCCATGAATCAAGGCAAATTGCAAGTGGTCAAACATTTTAGAGATCAGCGAACTAAAATGGACTGGAATGGGTGAATTTGACTCAGATGACCATTGTATCTACTACTGTGGGCAAGAATCCCTTAGAAGAAATGGAGTAGCCACCATAGTCAACAGAAGAGTCTGAAATGCAATACTTGCAGTCTCATAAATGACAGAATGATCTCTGTTTCCAAGGCAAACCATTCAATATCACAGTAATCCAAGTTTATGCCTTGACCAGTAATGCTGATTAAGCTGAAGATGAACGGTTCTATGAAGACCTACAAGACCTTCTAGAACTAACACCCGAAAAAGGTGTCCTCTTCATTATAGGGGACCAGAATGGAAAAGTAGGAAGTCAAGAAATACCTAGAGTCACAGGCAAATTTGGCCTTGGAGTACAGAATGAGGTGTGGCAAAGGCTAACAGAGTTTTGCCAGGAGAACACACTGGTCATAGCAAACACCCTCTGCCCACAACACAAGAGAAGACTCTACACATGGACATCACCAGATGGTCAGTACTGAAGTCAGATTGATTATATTCTTTGTAGCCAAAGATGGAAAAGCTCTATACAGTCAGCAAAAATAAGACCAGAAGCTGACTGTGGCTCAGATCATGAACTCCTTGTTGCCAAATTCAGACTTAAATTGAAATGCCATTACTCATTCCATTTTATTAATATTCCTCTTCTCTAGCTACCCAGACCACTGTTATCCCCAAACATTCCAAAGGCAGGTATGAAATTATATCCATCTTTATTGTATTCTCTACCCCACTTAGAACAGTACTAAGTTGAAAAAAAAATACTGGGTTCAAATACAACTATATAAATAGAAGTTTTTCTTGCTGTTTGGACTTATTGAAAACAGAGAAAATTTAGTAATTTTAGACTAACCCAGGTTATTCTTTTCTTTTGGGGCTGTGCTACCCATTGATGTTTCAATAGGCCATGTTTTATATGAGAATTTACACTCAGACTCACACTTCTGATACATATTTATCATAACAGTGGTTCTAGAACTTTAGTGTTTATCAGCCTCATCTAGGATTCTTGTTAGAACTACAAATTCCTGGGCCCCACTCAAACCTACATTAAGATCCATACTGTGAGAATCACAGCTTGTAATGTCATATTTTGTCTGGCTTATGAGAAAGGCAGGTTTGAATAAGAGAAATACAGTTTTGAGTAAGAGTAAGGTAAGTTTGAATAGAAGAAAGGCAGGTTTGAATATGACCTGGCCTCCTAGTTTTCATCATTCTTCCTCTCAGCAAAGAGAGTGGCCAGTACTACTTGGGCTGATGTAGGGATAGAAAAGGACCCGACTTTTGAAGCAAGCAGAGGGTAAAAGTCTGGGATATATGATCAAAGAGCATAGGAAATACATTAAGCCAATTCCAGGGCAAATCCAGGAAGGCTGAGATGGATTCAAATTGTAATTAATTTAAAAAGCTGAATTGACTATGAAATATTTTATTATTGTTGATTTTTAAGAAACACAGCTCAATACAGTACAAATCAAGGAAACAAGGATTCTTTTAAAATCATTCACTAACTCAAAACTGAGTGAACCCATTTCAATTAGCACTGCAAGTACATGAGAAAATTACTACAGGGGAAAGGATGTCCCTGCTGTTAAACTGTTACACCACTGCTTGTCTGGCTTTAGACACGCTGTCATGTTTAATGAGGGATCGATGATGGTCGATTGGATTGTCCTCTTCATCTGGTGATGGTGACAGGTCCTATACACATGCTGAATGGAAGAGAGCAAACAGCTGTTCTGCTTGTCAACTGGGGTGAACTGAGATCAAATGTCCCCCTTGTTGCTCAAGCACTGGAACTTCTCTGATTTGCATGAATTCTTTTGCTTCCATATTTTTATTTTTACTTAGCCCTTCTCTTGGTCTTCAGTGATGTTGGAGATTCACTATACTATACATCTCCCATCTGTGCCTCGTTGAGCCCCACTTGTTGGACAGATAGGATGAGAGATAGCCAGAAAACAGTAGCCTGGATTTTTGTTTTTTTTCTGTTCTTGGTCTAAGTAGATGCAACAATTTATGCCAAGTAACTAGTTAGGTAATAGGTTACCAAAATTGCAGAGGATGGATGAGGTCTAGAGATGGAAGATAGAGATATGAGTGAAGTTATGTCTCAACAAGACCTACAGTAATTAAGAACTTGCTCACAGAGAAGAGGTTTCATTTAGCCTCTAAATGGAGACAAATGAGAGGAGTTCAAAGTTACAAAAGGTGCTTTTGTAGCAAAAGGACTCAGCCCCTTCGTTTTTGACTTAGTCCATAACACCGAAACAGTGGGCCACTCAGCAAGGGTTGAAAGCAGTATGTTTGAAAAGATAAAAGGAAGGAGGATTTTGTACTCTTTGTGTATAACTTGTGAAATTTACTGCTGGCAGAACCATTGAGAAAAAGATTTTAGTTGGAAATAATAGTGAAACCTAGTTAGTAATGTGCAAGGAACTTCATGAATTCTAAATTCAACCTGTGAATAATATACAGCCCAGCTCTATTTATTAGAAGATGTTTATATACTAAACAAGTGCATCAGGACCCTTATAATAATATGATAAATATTCTATTGTCTGAGGGGACAGACCTTTCCTCAAAGACTGTATTCTGAGCAGGTACCACCCTCAAACTATAATGCCCACAGGGATGCCTCCAGTAGCTGTGATTTAATCAGCACACTGCTGATTTTTGGAGGCATGTTAGCTCCTTTAGGCCACTAGGATTCTATTAAGTGCTTTAGAAGAGGTAATCTAATCTACTGAATGGCCTGAAAGATTGAAAGCACCTCCAAACACAAGCAACTCCTCCACTTGTCAACAATAGGATTGGGGAACTGGGAATATTATTTCAACTGCTTAGGAAAGATAGGTGAAAGTGCTGGACAGAGGGCAGGCAATTATCTCTTTGCTATGTGTTAAGCAGCATTTCTCCTGGCTGATAAATTACTTCCAGCTGTTGGCAACAATTTTCTCCTCATCATGGCAG
Seq C2 exon
GAGCGAGAGACCCTGGCAAATGTTGAAGAGCAGTGCGAGCTGCTGATTAAATCCAAGATCCAGCTGGAGGCCAGCGTCAAGGCGCTGTCTGCGCGGGTGGAGGAAGAAGAGGAGATAAATTCCAAGCTGACTGCCAGGGGGCAGAAACTTGAAGATGAATGTTCTGAGTTGAAGAAAGAAATCGATGACCTGGAAACACTATTGGCGAAGTCACAGAAGGAGAAGCATGCTACAGAGCTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000018399:ENSBTAT00000032372:25
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.173
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=PU(20.8=53.5)
A:
NA
C2:
PF0157614=Myosin_tail_1=FE(36.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development