GgaINT0119192 @ galGal3
Intron Retention
Gene
ENSGALG00000015358 | Q91377_CHICK
Description
NA
Coordinates
chr1:90796528-90797455:-
Coord C1 exon
chr1:90797200-90797455
Coord A exon
chr1:90796771-90797199
Coord C2 exon
chr1:90796528-90796770
Length
429 bp
Sequences
Splice sites
5' ss Seq
GCTGTGAGT
5' ss Score
7.39
3' ss Seq
TCTTCCTTTTGCCACCACAGGAG
3' ss Score
7.82
Exon sequences
Seq C1 exon
GGATGCCCTTCTTGTAATTCAGTGGAATATCCGTGCCTTTATGGCTGTGAAGAATTGGCCCTGGATGAAGCTTTTCTTTAAGATCAAACCTCTTCTGAAGTCTGCAGAAACTGAAAAAGAGATGGCCAATATGAAGGAAGAGTTCTTGAAATTGAAGGAGGCCCTGGAAAAATCTGAAGCAAGGAGAAAGGAACTTGAAGAGAAACAAGTCTCTTTAGTTCAGGAAAAAAATGATTTGCTATTGCAGCTCCAAGCT
Seq A exon
GTGAGTAGACACATACTTATGTATTCATTAGATGTACTTTCAAGATCAAAGGCTTACAGGCCATGATGTTATTTCAGTTCAACTAAAATAAGTTGTTGGTCTTGTCAGAGTCTTGCCAAAAAGTAGAACAGATAGAAATTCTCATGCTCTAACATAAAACTAGGTGGACTAACAATGCAAGTCTTATCAGAGTTCTGTCCAAAGCAATTTCTGTGTCAGTTATATACAAAAGCATAATTAGAGAGGCATGCATGACTAGTCCTTCTCACCACTCTATTGTCCTGCTCTGTTAATTAATTATTGGTCTTGTTTTCTGAAGTCAGGAGTAGATAATTTTCCCTAGCCTTGACTGGGTCAAGTCCTGTGACCACTTTACATAGGTGAGGGATGAGACGATGACTACTTGACCTCTTCCTTTTGCCACCACAG
Seq C2 exon
GAGCAAGACACTCTGGCAGATGCTGAGGAGCGATGCGACTTGTTGATTAAATCCAAGATTCAGCTGGAGGCCAAAGTCAAAGAGCTGACAGAGCGAGTTGAGGATGAGGAAGAGATGAATTCTGAGCTGACATCCAAAAAGAGAAAATTGGAAGATGAATGCTCTGAGCTCAAGAAAGATATTGATGATCTTGAAATAACACTTGCAAAAGTAGAGAAAGAGAAGCATGCTACTGAAAATAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000015358:ENSGALT00000036887:22
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.009 A=NA C2=0.333
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=PU(27.0=61.6)
A:
NA
C2:
PF0157614=Myosin_tail_1=FE(40.8=100),PF0157614=Myosin_tail_1=PU(11.2=14.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAGTGGAATATCCGTGCCTT
R:
TCCTCATCCTCAACTCGCTCT
Band lengths:
348-777
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]