RnoINT0096436 @ rn6
Intron Retention
Gene
ENSRNOG00000061038 | Myh15
Description
myosin, heavy chain 15 [Source:RGD Symbol;Acc:1565858]
Coordinates
chr11:54267284-54273058:-
Coord C1 exon
chr11:54272803-54273058
Coord A exon
chr11:54267527-54272802
Coord C2 exon
chr11:54267284-54267526
Length
5276 bp
Sequences
Splice sites
5' ss Seq
GCCGTGAGT
5' ss Score
8.56
3' ss Seq
CTCCTCATCCCTGGTGGCAGGAA
3' ss Score
4.74
Exon sequences
Seq C1 exon
GGATGCCCTTGCTTTGATCCAAGAGAACATAAGAGCTTTCATTGCTGTGAAGACTTGGCCCTGGATGGGGCTCTTCTTTAAGGTCAAGCCCCTTGCTAAGTCTGTAGGAGCTGGAGAAGAGATAGCTGGCCTGAAGGAGGAGTGTGCACAGCTACAAAAATCTTTGGAGACTTCAGAATCCCAGAGGGAGGAGCTGAAAACAAAGCAAGTCTCCCTTGTCCAAGAAAGGAATGATCTACTTCTTCAGCTGCAGGCC
Seq A exon
GTGAGTGCTGCCCACCCCTTCCTTATAGCTAGCTTTCAATTTGGCTAAGTAGTTCCATCCACACTGCTGACTTAAGAAAAATATCAGAAGCATGCACTAGCTTTTCTAAAAACACCGTTAAGTGCTTATTTAAACAGAGACCGTGGAAACACATAAACAAAAAATTTGTATCAAAACGAAGTGGTTTTATTGGTAGTACATCTTACAAAACGAGTAAACCTGGGCTGGGGAGAGGCTCAGTTGATAAAGCACTTGTCCCAAGTGTGAGGACAGGGGTTTATACACCTATAGCCTATGAAAAAGCTTAGCAAGTGGAGTGGCCACCAGTATCTTCAGAATAAATTCAGAACACTGAGTTGGGAGATCCCTCTGGCAAATTGTTTAGTTATTTTAACTGATTTATGATATCTTGGTTCAGCTGAGAGACCCTGCCTTAATTGTTAAGACAAAGAACCATCCAGAAATTAGCACGTAATATTAGCTCCTGACCTCCACATATGTGTATGTATATGTGCATGCATATATATGTGTCTACTACACTGATAAATACATGAAAAACAAGAAGAAAGAGGAAGAGAAGAAAACATGTTGGGGCTGGAGAGATGGCTCAGTGGTTAAGAGCACTGACTGCTCTTCCAGAGGTCCTGAGTTCAAATCCCAGCAACCACATGGTGGCCCACAACCATCTGTAATGCTCATATAAAAATAAGTAAATAAATCTTAAAAAAGAAAAAGAAAACATGTCAAATTACCAATGGGTGTTTGTGCATAATATCATATGGGGCCAGGAAGACCTAGATCTTTGATTCTGAGTCTTTCTTACTCAGTGACTCAGGTTGACCTGGAACTTACTATGCAACACAAGCTGGCCTTGAATTCATGGCATTCCTCCTACATCGACCTTCTGAGTCCAAGGTTACAGAAATGACCATCACATCCTACTCTTGTTGGATCTTAACTGACAGTGACTCATTAGCAAGTCAGTAAATTGGACTTTAGTAGGTCGCACAGAAGCCTAACATATATATTCTGCATAATACAACTCATATTTCCTCAACTTTCTCTTCCTGCTTCCTCCCCATAGCCCCAGTCATTACTAATGAGTTGAGTTCTTTGAAGATCCTTCTCAACCTTGATGTAGTAACAAACACAGCCGTGAGGAGAAAATGAAGTGAAGATACTAAGGCCTTATTCTCGGATTTTGTAATTAAGTAGAGGATACGTGAATCTAGAGAACCTGAATATATGATCTTGATTTTGCCAGGGCCTGAAAGAGGCCATGCGCATTCCTGCTGAGGTTTCTTCTGCTCCTGTAACACGTACACTTGAGTTCCTAAATTCCCATTCTGGGCACACCAGTCTTCACATTTAATCTGACACATATATACAATTTCCAGTCCCCTCCCACATTCTTTCTCTATAGTCCTTTGGGTTACCATGACCCCAAATACCCTCAAGAGCAGGGATGCAATTTTACTTTTATTAAGCTCTCTGCAAAACACGGTACTAGGTTGAATAATCCTGGGTTCGAAAACAATTATGTGTAGTTTATTTTGAAGTTCTTGCTACTTAAATCTACTGAACGCAAAACTAACTGAAAACAAATGTAAATAATTACTTTCAGAAAGAGACAATTTATTATTTTGTTTGGGGATGTTATTTGCCAATGTAGTCAATAGGCTATATCATAAGTAACACTTTACATCAAGACTGACATTTCTGAAGTGTATTAAGCAGAGCAGTTATTCTAGAACTTTATTGCACGCCAGCCACTTTTATTAACAATAAGAATACCTGGTTCCCATTCCAAATCTACTTGTTGATCTGTACTTTTAAGAAAAAAAATGGCACTTTGTATCAGTTTTAGAAGAGACCTAATATATCACCTACTTTTCCATTGCTGTGATAGAATACCTCTGACCAAGAGAAACTCTGGGGGAGAAAAGGTCCATTTTGGCTTACAGTTCCAGGGAGGAATAAAGTTCATCACTTCAGGGAAAGCAAATAGGAGCGTGAGGCAATCTCAGGACCCAGGATGTTGGCTGATCACATTTTATCCACACATTATAAGCAGAAAGGCAGGGCAGGAACTGGAAGCCATACACTAAACCCCCAAAGTCTCTAGACATACTTTTGCTTCCTAAAGGTTCCACAGCCTTCCCAAACAACACCATTAACTAGGGACCAAGTGTTTGAACACATGAGCCTATGAGAGACATTACTCTTCCAAACCACATACCTAGCCTTCAGTTCCTATCTTAGAGGTCTAAAATGGTCTGTGACACTCGGGGAAAAGGGAGCCTGTATAAGGGAGTAGTGAGCACAGAGTTGAGAAACATTTTAAAGGCCATAGTGGGTGACACTGAAAACATATGGAAGGAAATTCCAGAGAAACCACATGAGTCTGTTTGAGGTCATGTGATAACTGAAAATACATGTTAAAACCTCTATAAGATATTTTATCATCATTTATTTTTTAAAGGTACAGATAAACAAAATGGTACAAAAGGACAAAGGTATTTTCAATCCATTACTTACACTACAACACAACTAAGGCAACAATGTACCAATTTACAGTGGTTCCATGCGAGAGAATATGAACAGAAGAAAAGTTCTCCGATCTGCTAAACCGCCATGAAATTGCCAAGGCACCCCTCCCCTATCTTTAGTGAAGGGAGAAGTAATGGTCAGTTGACTGTCCTCTTTCAGTGTTGAGTGTTAGGGTCCGTTCACAGACTGGATGGACAGTAGAAAATAGCTGTTCTTCTTGTCAGCCTGAGATGGGAAGACCAGATGTTCTCAATATTTCCCAAACACTGGAAGCTTCTCTGTTTGTTTTGACATTTACTAAGTACCCTGGTAATGCTTTCTAAATTGGCCCCATGCTTTGAATCTTCAGCAAAGTTTTAAGTTTATTATTTTCTCTCTCTCCATATGTCTGCTTTGAGCCCTATTTGTTTAGATGGAGTTGTCAAGAGAGGAGTTACAAAGAATTCAAAAAAACCTAGATTTATATCTGTATGCTGCTTTTTAATCTTCTTAACTGACGTAACTTGGGTGTTGTAAATGAATAGTTAATAAATTCCAAAACTGTCATTTCAGTTAAGATGCATAGGAAGTTTAAAGATGAAATATGAAGCTTATGGTAGAAGTGGCTTACTTTAACTATATTTAGATACCTGAGACAATTCACTTAGGAATAGAAAAATGTTTCTTTTAACTTAGTTTTAGGGGTTCCAGTCAATGCTCAGAAGACCTACTGCCTCTGGGCTTCTGCTGGGGGGGTTGGGTGAAAGTATCAGGGAGCTCAAGTAGAACAGTGAAATAAAAGACAAATGGGCTTATTGATTGCTCTCAGGAGAATGGCTTTGGTGACCCAAGGGTCTTTCATTAGACTCTACCTAAAGTTCTAGCTAATAGCTCCTACCTAGCTTACATCTCTATTGCTGTGAAAAACACCAACCAAAAGCAACTTGGAGGAGTGAAGGTTTTTTCTTCAGAGTACTCAGAAGTCTTTCTGGCCCAGAGCTTCAAATTCTGTCCATAATCCTTTTCCCCCAAAACATGATCAGGTCTATCGCAGCAAGACCAAACTCCAGATACCAGTCTTGCTTCTGGTTTGCTTTTTTGTGGCAATAATGAAACATTGAGCCAAGTCAACTTGAGGAAGGAAAGAGAATTTATTGTGTCTTAGAGGAAAGAGCCCATCAGCAAGGGAGTCAAGGCTGGAGGTAAAGGTAAGATAGAACTAAAGCCAAAAGCATGGAGGAATGCTGCCATGTGCTTGCTCTCATCCTCAACTACTTTCACAGTATCCCATTAAACAGATTAGTTATTTACCTATTCATCTATAATTTATTATATGTTATGAGTGATATATATATATATATATATATAAAACATGCACGTGGTGCATATATATATATGTTTACCACGTGCATGTCTGGTGCTCATGAAGTCAAGACGAGAGCATTGGATCCCCTGGTATTGGAGTTAGAGCCAGTTGTGAGCTGTCATTGGGCTCTGAAAACTGAATGTGGGTCCTCCGCAAGAACAGATATCTACTCCTCCCGTGTCTTGCAATAGTTTCTCCCTCTTTCCCATAATGATCCCTAAACCTTGGGAGGAGTGTGATAAAGATGTTCCATTTATAGATGAGCCCTTCAGTCTCTTACAAATTGTAGGTGTCTGCATTAACACATACAGCAAGAAGGAATTTCTCTGATGAAGGCCGAGAGGGGCATTAGTTTATGGGTACAAAGAATTTAGGGGAAAGTTTGTGACTATATTCATTTAGCAAAATAACAGTACTAGGCTCTCCCTTGGTGCCTATGATCTGGCCAGCAACGGGTGTTTGGCCTAGTTAATGACACCAGGTAGGGGTTACATCTTGTGGAATGGGCTTTAAATCCAACCAGAAACTGGTTGGTTTTTCACATAGTATTTGTGCCAGTGTTGTACTGTTTGGCTATAGCTTTCCAAACCAGTGACTCTTAGTGGTCTTACAGCTGGGCAAGACTGTAGATGACCTTTCTTTCTCTAGTAGTATTCATAGAACCTTCCAGCAGCCTTTCATCTTTACTTGATATACAACATAGGAATAATAGAAAACAGTGGTATTTGGTGACTACATTTGAGAGTATAAAAAAAATAAGCAGAACTTATGTTCTATGTGCATAATTTGTGAAATTCGCTGCTGGCAGAATCACTGAAGCAGAAATTCTAGTTGGAATTAATAGTAAAAGTTAATGACTTGTAAATAAATTTATGAGTTCTAAATTTAACCTAAGCATTAAAATGTATTACTTAGCCCAGTTTATAGAAATGTATACTAAACAAAATACATCAGAGCATTTATAATGTTATAAATATTACATTGTGCAATATCTCTTACATAATATTCTAAGCAGTTGTCAGTCAATGGGCCCACACCAGTACTTCTAGGTACTTGATTTAAATAGCATACTTTTTGCTTTTGGAAGCATGCTGATTCTCTTAGGCCACCAGGTTTCTATTAAGTGCCTTAGAAGAGCTCACTTATTCTACTAGATAGGCTTGAAATTTAAAAGCCTCTTCCAAACACAAACAACATCTCTACTTTTCAACAACAGGGTTAGGAATCTGGAAATGTTATTTCAGCTGCCCATGAAAGGTAGGGAAAAGTCCTGGGCAGAGGGCAGGCAATTATCTCCTTACTGTGTTAAGCAGCACTGTCGCCCAGCTAGTGAATGACTCCTATTTGCTGGCAACAATTTTCTCCTCATCCCTGGTGGCAG
Seq C2 exon
GAACAAGAAACCCTGGCAAATTCTGAAGAGCTGTGTGAATCACTGATTAAATCCAAGATAGAACTGGAAGCCAAAATCAAGGAGCTCTCCAGGCGGGTGGAGGAAGAAGAGGAGATAAATTCTGAGCTGACTGCCAGGGGCCGGAAACTGGAAGACGAATGTTCTGAGTTGAAGAAGGAAATCTATGACCTGGAAGCAATATTGGCGAAGTCAGAGAAGGCGAAGTGTGCCGCGGAGCACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000061038:ENSRNOT00000090307:23
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.012 A=NA C2=0.173
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]