DreINT0099885 @ danRer10
Intron Retention
Gene
ENSDARG00000076075 | myh7ba
Description
myosin, heavy chain 7B, cardiac muscle, beta a [Source:ZFIN;Acc:ZDB-GENE-100914-2]
Coordinates
chr11:24959283-24961777:-
Coord C1 exon
chr11:24961522-24961777
Coord A exon
chr11:24959526-24961521
Coord C2 exon
chr11:24959283-24959525
Length
1996 bp
Sequences
Splice sites
5' ss Seq
GCAGTAAGT
5' ss Score
9.07
3' ss Seq
TGTGCATATTCACGCTACAGGAA
3' ss Score
6.1
Exon sequences
Seq C1 exon
GGAGGCTCTGATGATCATTCAGTGGAATATTCGGGCCTTCAACATTGTGAAGAACTGGCCATGGATGAAACTGTTCTTCAAAATCAAACCCCTGCTGAGGAGCGCAGCCACAGAAAAAGAGCTGGCCGCTCTGAAAGAGGAGTTCCTGAAGCTAAAGGAAGCACTAGAGAAATCTGAGGCCAAACGTAAGGAACTGGAGGAGAAACAGGTCAGCCTGATCCAAGAGAAGAATGACCTTTCTCTGCAGCTTCAGGCA
Seq A exon
GTAAGTATCATGCAATATTACTTTATCTTGTAAATATAACACAGGCTCATTGGAAATACATGCTTCAGACTACATTTTTGTGAACTGCAAAAAATTCACTTCATCATATGTTTGACTGCAGTTTCTAGGTTAAATGAATGCATTTTTCCTTTTCGAACAAATAATATTTACAGGGACATATTATCAACAAATAAAGGATTATTTTCTTGCAGTTATTTGCACAACACCAAAAAAATTATACAAAACAAATGACTGGCGTCTGTGGTTTGTGGAATAATATGTTTGCCTCTCTGATCTATCTCCTTTTGGACAACTTTTCCAGTGTGGTCAGTTTGTTTGCAAACTCACTTTGTACATTGTTTTACTTGTGATGCAGAGAGCTCAGCTTGAAGTACAGTTCCACTAAAGAGATAAAAGCAATGTAAAATCAAGGTAAAACTTTTCTTAATAGTTTTTAAAAACACTATTGCTTGGGTTGAGGAAAGGGTTTCAGATCAGTGGTTCGCATATAACAAAACATACCCTAATTAATGTGTTTCAGATTTAACAACTTTTAGCCAGCATCTTCTAGTGGATTTTTCATCTGAAACAGCAACATAGCATACTCAGAGCAATGTATTTTAGGGTTTGAAAAAGGCAAGTATTTCCAATGAGCCTATTTGGGTACATGTATGGTTTACTCATATCAAAAAAGCTACAGTGGTCACAAAACTATTTGTTCTTCTTCGAAATGAAAGTACATTAAATAATTTGCAGTGTCATTGCACATAGACACACTAAATTGTTAAATGTTCAAAAAGTGTATTAAAAGTATTGCCGCACAATATATAGTTTCAGCATCGATATTGCAATTCGCCCATCCTCAATAATCACGTCGTAATTATAGTTTCTCAGAAACCACAGTTCAGAACACAGAAGATTTTTGGAGTCACTGAAGAGTTTAACCATAATGGAGTTCATTACGTTTATCATTTGCATGTTTTAAGGCCTTTGAGTACTGAAGTATATGAAATTGTAATGATTGTAACAGTAATAAAGATGGAGTTATTGAATTATTTATACCATAAAGACTATACAGTGTTATTTTTACATTAGTTTATTTAATTTCTGTACCAATAATAACACAGAATAATCCCCATAATCTTCCAGAATGATCCCAATCAGTCTAGATTAATCAATTATTTCCAAATAGAACCATTCAAGCTATCTTGTGAAATAGAATTCACATCGCAATTTATATATAATCGCAGCAAAACAAAATATTGCAATGTCAATATTTTCCAATACCAAGCAGCCCTAATAATAATAATAATTACATGCATAAAAATAAATAAATAAATAAAAACATTTATATAGCATTTTTCTGGACACTTAAAGCACTTTACACATTGGGGGGAATCTCATCATCCACCACCAATGTGCAGCATCCACCTGCATGGCATGACAGCAGCCATATTGGGATGCCGGGGATAAACCCCTCTTTTTCAAAAGACATCCTGGGATTTGTAACGACCACAGAGAAACAGAACCTTGGGTTAACGTCTCATCTGAAAGATGGCACTCACTGAGCAGTAAAGAGTCTCCTCCACTATACCGGGGCGTTAAAACCCACATAGATCGCAGGTTGTGAGCCCCCTGCTGGCCTCACTAACACCCATTCCGGCAGCAACCTAGCTTTCCCATGTGGTCTCCTATCCAGGTACTGACCGGGTGCAGCCCTGCTTAGCTTCAGTGTGTGACCATGTGAGAATTGCAGAGAGCTAGTTGCCGACAAATGAATAGGCTGAATTCATAAGTATGGGATTACTATACTTCGTTTCTCTCTATATATCTTCAATTATTAGTTGTACACAGAGCCTAATTTCAAAATTATCAATGATCTATTGCAGCTTCAGGCAAGAATGATGGTGGAAAGCATATGGTTTTAATACTGCTACTCTGTAAACTATGAAATTGTCTTTGAAGGATTGAATAACTGTGCATATTCACGCTACAG
Seq C2 exon
GAACAAGATAACCTTGCAGATGCAGAGGACCGCTGTGATCTGCTCATTAAGACCAAGATCCAACTTGAAGCCAAAGTAAAGGAGATGACCGAACGCCTGGAAGACGAAGAGGAGATGAATGCTACAGTTCTGGCAAAGAAGCGTAAACTGGAAGATGAGTGCGCCGAGCTGAAAAAAGACATCGATGATCTGGAGATAACCTTGGCCAAGGTGGAGAAGGAGAAGCATGCCACTGAAAACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000076075:ENSDART00000097316:23
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.247
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=PU(26.5=60.5)
A:
NA
C2:
PF0157614=Myosin_tail_1=FE(40.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCGGGCCTTCAACATTGTGA
R:
TCTCCTCTTCGTCTTCCAGGC
Band lengths:
342-2338
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]