BtaINT0097366 @ bosTau6
Intron Retention
Gene
ENSBTAG00000003512 | MYH7B
Description
myosin, heavy chain 7B, cardiac muscle, beta [Source:HGNC Symbol;Acc:HGNC:15906]
Coordinates
chr13:64904225-64905826:+
Coord C1 exon
chr13:64904225-64904480
Coord A exon
chr13:64904481-64905583
Coord C2 exon
chr13:64905584-64905826
Length
1103 bp
Sequences
Splice sites
5' ss Seq
GCGGTGAGG
5' ss Score
7.93
3' ss Seq
ATTCCCGTGTCCCCCTCCAGGAG
3' ss Score
10.67
Exon sequences
Seq C1 exon
GGATGCCCTGTTCACCATCCAGTGGAACATCCGTGCCTTTAACGCTGTCAAGAACTGGTCATGGATGAAGCTCTTTTTCAAGATGAAGCCGCTGCTCCGCTCGGCGCAGGCTGAGGAGGAGCTGGCGGCCCTGCGGGCAGAGCTGCGGGGGCTGCGGGGGGCCCTGGCTACTGCGGAGGCCAAGCGCCAGGAGCTGGAGGAGACGCACGTCAGTGTCACCCAGGAGAAGAACGACCTGGCCCTTCAGCTGCAGGCG
Seq A exon
GTGAGGCGGGGAAGGGCGGGCTTTCTTTCTGCGACCTGGTGCCCCGACCCCCGGGCATCCTCAGGGAACCCCAGGCTGCTCCGAGGAAATAGCACAGGCAGACGCACCGTGCCCCACTCCCCCAGACCACCCCCCCTCCCCCCCGCCCAGCCAAGGCCAACCTGGCATGTGCTGGGTGCTCAGGCTTTACCTGGGTCCTTTTTGCTATTCTGGAGGCTCATGGGCTCATACCTGTGTGCGGCCTCCTCATACCCAACCTCCCCACCCAGTCAGTGCACATGCCCCAGTGCTCCCACACCCTGGGACCCCATGGCTTCCTGCTAAAGCCTCCGTGGAGCCCCATCTCCCCAGCTCTCTCCTCTGCTCCCTCCCTGAGACAGTGCCAGGCTCTCTTCTCTGGTTAAGGGCCATGGGAACCCAGGCAGCAGGTAATAGTAACAACCAAAGGGCAGAGATCAAGGGTCCAGATCCTCCCCCAAGTCCACAGAGCCCTTCCTTCCTTCGGCAAACACCTTGAGTGTCAGGCACCACAGAAGCTCTGGAGATAACACTGGTGGGAAGACAGACGGGCCTGTGCTCAGAAACCCACCCTCTAGAGCAGGAGATGGTTATCTGGTCAGGTGGTGAGGAAACAGTGCGGTGGCCGAGAATCTGAGCCCTCTGTGGCCCCGCAGGGCCCTCCCCACCCCGACTTCAGTGAGGGCGGACCTGGCCGTTGGCTTCTCTCCTTGAGCCTTGTTTGGGCCTTTCTCTGGGTCGCCCCGCAGCCTAGGTTCCCCTCTTGTCCCCCGGTCCATCCCTCCACTTGTGCTCTCATCCCACCACACCTGATTGCCTTCAGGGCCCAGAACAGGTCATTGGCATGGCATTCCTTGGTCCCAGAAGCCAACTGAACCTGTGTCAGGCCTTGGCATGGACACATGAGCTTTCTGTCTAGGACCTGGCCTGGGGTCCCTCAGCTGTCCTGACTCTGCGCCATTCCCGTGTCCCCCTCCAGGAGCAGGACCCTCGGCTGTCCTGACTTTGCGCCATTCCCGTGTCCCCCTCCAGGAGCAGGACCCTCGGCTGTCCTGACTCTGCGCCATTCCCGTGTCCCCCTCCAG
Seq C2 exon
GAGCAGGAAAACCTGGCGGATGCTGAGGAGCGCTGCCACTTGCTCATCAAGTCCAAGGTGCAGCTGGAGGCAAAGGTGAAGGAGCTGAGCGAGCGGCTGGAGGACGAGGAGGAAGTGAATGCAGACCTGGCTGCCCGCCGCCGCAAGCTGGAGGACGAGTGCACAGAGCTCAAGAAGGACATTGACGACCTGGAGCTGACGCTGGCCAAGGCCGAGAAGGAGAAGCAAGCCACGGAGAATAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003512:ENSBTAT00000039242:23
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.058 A=NA C2=0.296
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=PU(23.4=62.8)
A:
NA
C2:
PF0157614=Myosin_tail_1=FE(34.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACATCCGTGCCTTTAACGCT
R:
TTCACTTCCTCCTCGTCCTCC
Band lengths:
350-1453
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development