RnoINT0096563 @ rn6
Intron Retention
Gene
ENSRNOG00000018997 | Myh7b
Description
myosin heavy chain 7B [Source:RGD Symbol;Acc:1307994]
Coordinates
chr3:151142836-151144067:+
Coord C1 exon
chr3:151142836-151143091
Coord A exon
chr3:151143092-151143824
Coord C2 exon
chr3:151143825-151144067
Length
733 bp
Sequences
Splice sites
5' ss Seq
GCAGTGAGT
5' ss Score
7.39
3' ss Seq
GCTCCTCCCCATCTCCTCAGGAG
3' ss Score
8.96
Exon sequences
Seq C1 exon
GGATGCCCTGTTCACCATCCAGTGGAACATCCGGGCCTTCAATGCCGTCAAGAACTGGTCCTGGATGAAGCTCTTCTTCAAGATGAAGCCACTGCTGCGCTCAGCACAGGCAGAGGAAGAGCTGGCAGCACTTCGGGCAGAACTGCGGGGGCTGCGGGGGGCCCTGGCTACGGCTGAGGCCAAGCGTCAGGAGCTGGAGGAGACTCAAGTCAGTGTCACTCAGGAGAAGAATGACCTGGCCCTGCAGCTGCAGGCA
Seq A exon
GTGAGTGTGACAGGGACAAGGACATCCGGGTGGCCCGAAACCTTGGAAAGCAGACTGTGGCCAGGGCAGCCCTGGAGTGATCTGGGCACTTCAACCTTCTGTGCTATCTCCCTACTCTTGAAATAAATACCTGGAGAGGAGGCCCAATGTCTGCCCAGCCTTCCCTGCAAGTTCAGGGACACACGGATCTATGAGGCAGATAATAGGGTCATATCCAGAGGGCAGGGGTCAAAGTCTGGAACTCCCCAACACAGTTCTTTTTAATTTATTCTTATTCTATGTGCATCATTTTGTCTACATGCGTGTCTGTGTGAGGATGTCGGATCCCCTGGAACTGGAATTACAGACAGTTGTGAGCGGCCATGTGGGTGCTGGGAATTAAGCCGGAGTCCTCTGGAAGAGCAGCCAGTGCTCTTAACCACTGAGCTGTCTCCTCAGACCCTGCCCAGCATAGGTTCTGAATGTCACTTGGACGCCAGCCCCAGGCTGATGCTCCGGGGAAGATACAGACATGAGGGTTATAAAACACCCACCCAGCCTGGGAAACCTCCCTCCCACGCAGCCGGCAGTGAGGAAACATCTACCCAGGAAATGGTCCTCGGTGCTGCTCCCTAGTGGGCACAGATGGACTTGCACCCAGCTACACCACCTCTCAGCCGCAGCTCCTTAGCAAGCGAGTGCACAGTGGGACTTCCGCGGGTGGCTCTTTAACCGCTCCTCCCCATCTCCTCAG
Seq C2 exon
GAGCAGGACAACCTAGCGGATGCGGAGGAGCGCTGCCACTTGCTCATCAAGTCCAAGGTGCAGCTCGAGGCGAAGGTGAAGGAGCTGAACGAGCGGCTGGAGGATGAGGAGGAAGTGAACGCTGACCTGGCCGCACGCAGGCGCAAGCTGGAGGATGAGTGCACGGAGCTCAAGAAGGACATTGATGACCTGGAGCTGACCCTGGCCAAGGCTGAGAAGGAGAAACAAGCCACCGAGAATAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000018997:ENSRNOT00000025859:23
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.058 A=NA C2=0.333
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=PU(22.9=61.6)
A:
NA
C2:
PF0157614=Myosin_tail_1=FE(34.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATGCCGTCAAGAACTGGTCC
R:
CAGGTCAGCGTTCACTTCCTC
Band lengths:
345-1078
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]