MmuINT0103620 @ mm9
Intron Retention
Gene
ENSMUSG00000074652 | Myh7b
Description
myosin, heavy chain 7B, cardiac muscle, beta [Source:MGI Symbol;Acc:MGI:3710243]
Coordinates
chr2:155452073-155453550:+
Coord C1 exon
chr2:155452073-155452328
Coord A exon
chr2:155452329-155453307
Coord C2 exon
chr2:155453308-155453550
Length
979 bp
Sequences
Splice sites
5' ss Seq
GCAGTGAGT
5' ss Score
7.39
3' ss Seq
TCCCCACCGCATCCTTTCAGGAG
3' ss Score
7.85
Exon sequences
Seq C1 exon
GGATGCCCTGTTCACCATACAGTGGAACATCCGGGCCTTTAATGCCGTCAAGAACTGGTCCTGGATGAAGCTCTTCTTCAAGATGAAGCCACTGCTGCGCTCAGCACAGGCGGAGGAGGAGCTGGCGGCACTGCGGGCAGAGCTGCGGGGGCTGCGAGGGGCCCTGGCTACGGCTGAGGCTAAGCGGCAGGAGCTGGAGGAGACTCAAGTCAGTGTCACTCAGGAGAAGAACGACCTGGCCCTGCAGCTGCAGGCA
Seq A exon
GTGAGTGGGACAGGGACTCAGGTGGCCAATGAAACCCTGGAGCCAGACTATGGCCAGGGCAGCCCTGCAGCGCTGCGGGCACTTCGACCTTCTGTGTTGTCTTCCTACTTAACGTCTGCCCAGCCATCCCTGCAGGCCTTTATCCATACGCCCTAAAGCCAAAACTGCAGGGGAGCCACACCTCCCCTCTCTTTGATTTCCCTGAGACTATAACCCTGCTCCCAAGACGAATATGAGGCAGATAACAGAGGGCAGAGGTCGAAGTCTGGAAGTCCGCAGCATTGTTTTTGATTTATTTATTCTTATTCTATGTGCATTATTTTGTCCACATGCACATCTGTGTGAGGGTGTCAGATCCCCTGGAACTGGAATTACAGACTGTGTGAGCTGCCATGTGGGTGCTGGGAATTGAACCCGGGTCCTCTGGAAGAGCAGCCAGTGCTCTTAACCACTGAGCTGTCTCCCCAGCTCCTACCCAGTATAGGCTTTGAATGACACTTGGATGCCAGCCCCAGGCTGAGGCTGGAGATGATGGTTAGAAAACTCCGCATCCAGCATGAGGGCTTAAGCAGCAGGCAGTGAGGAAACTCTGCCTCCTCCTGAAATGGCCTTTGGTGCTGCCCCCTGGTGGGCAGCGCTGGCCTTGCACCCAACCATACCACCTCTCAGATGGTTGCAGCTCCTTAGCAAGCAAGTGCAGTGGGGCTTTTCTCCTAGAGCTCTGCCTAGGTCTCCTAGGTCACATATGTTGTGGCTAATGTTAATTTTTCACAGTGCCATTTCTGTCTCTGTGTCCCCTGCAACAGTCCCCAGAGCCCAGCAGAGTGTAGGTGCGCCAGCTCCTCGTCTATCGAGTTGAATTGCCAGCATGTGCCTCACTGGAGTTGCCTTTGCATGGTCAAATGGCCTTTCTTCCCCAGGGCTGGCCCTGGCCTCCTGCCGACCGCTCTTTAACTGTCTCCCCACCGCATCCTTTCAG
Seq C2 exon
GAGCAGGACAACCTCGCAGATGCAGAGGAGCGCTGCCACTTGCTGATCAAGTCCAAGGTGCAGCTGGAGGCGAAGGTGAAGGAGCTGAGCGAGCGGCTGGAGGACGAGGAGGAAGTGAACGCGGACCTGGCCGCCCGCAGGCGCAAGCTGGAGGACGAGTGCACGGAGCTCAAGAAAGACATCGATGACCTGGAGCTGACGCTGGCCAAGGCCGAGAAAGAGAAACAAGCCACAGAGAACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000074652-Myh7b:NM_001085378:24
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.058 A=NA C2=0.284
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=PU(22.6=60.5)
A:
NA
C2:
PF0157614=Myosin_tail_1=FE(34.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGAACATCCGGGCCTTTAA
R:
TTCACTTCCTCCTCGTCCTCC
Band lengths:
354-1333
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: