BtaINT0097291 @ bosTau6
Intron Retention
Gene
ENSBTAG00000037794 | MYH4
Description
myosin, heavy chain 4, skeletal muscle [Source:HGNC Symbol;Acc:HGNC:7574]
Coordinates
chr19:30089625-30090161:-
Coord C1 exon
chr19:30089985-30090161
Coord A exon
chr19:30089771-30089984
Coord C2 exon
chr19:30089625-30089770
Length
214 bp
Sequences
Splice sites
5' ss Seq
GATGTAAGT
5' ss Score
9.11
3' ss Seq
AAAATGCATTATAAACTTAGCTT
3' ss Score
-0.47
Exon sequences
Seq C1 exon
GTGAAAAACCTCACAGAAGAGATGGCAGGCCTTGATGAAAACATTGCAAAGCTGACCAAGGAGAAGAAGGCCCTTCAGGAGGCCCACCAGCAGACCCTGGATGACTTGCAGGCAGAAGAGGACAAAGTCAACACCCTGACCAAATCTAAAACCAAGCTAGAACAGCAAGTGGAGGAT
Seq A exon
GTAAGTGTGAAAAACACAGTGTTTCCTCTTAAGGTAAAACAAACTATTGTGACACGGAACCATCAGTGATGCTCATAAGCCTTTAATTGCTGATTTAGAAATAATAATTAAAGCTTTCCTGCTATTTGCTGTATCTTTTAAAATTCTCCTGTGCCTTTGAAAGCTACGTTTGGTGCTTAAGAACTGAAACAAATAAAATGCATTATAAACTTAG
Seq C2 exon
CTTGAAGGATCTCTGGAACAAGAGAAGAAACTTCGCATGGACCTAGAGAGAGCCAAGAGGAAACTAGAGGGTGACCTAAAACTGGCCCAAGAATCCACAATGGATATAGAAAATGATAAGCAGCAACTGGATGAGAAACTTAAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000037794:ENSBTAT00000061014:22
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.983 A=NA C2=0.918
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(43.0=100),PF087025=Fib_alpha=PU(14.5=28.8)
A:
NA
C2:
PF0157614=Myosin_tail_1=PD(25.2=69.4),PF087025=Fib_alpha=FE(41.0=100),PF0157614=Myosin_tail_1=PU(1.6=28.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGAAGAGATGGCAGGCCTTG
R:
AGTTTCTCATCCAGTTGCTGCT
Band lengths:
304-518
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development