GgaINT0129363 @ galGal3
Intron Retention
Gene
ENSGALG00000023867 | MYH1
Description
NA
Coordinates
chr18:390717-391124:-
Coord C1 exon
chr18:390948-391124
Coord A exon
chr18:390863-390947
Coord C2 exon
chr18:390717-390862
Length
85 bp
Sequences
Splice sites
5' ss Seq
GATGTAAGA
5' ss Score
5.46
3' ss Seq
AATGATCTCCTTTGGTTTAGCTG
3' ss Score
6.67
Exon sequences
Seq C1 exon
GTGAAAAACCTCACAGAGGAGATGGCAGCCTTGGACGAGAACATTGCCAAGCTGACAAAAGAGAAGAAAGCCCTCCAAGAGGCCCATCAGCAGACACTGGATGACCTGCAGGCTGAAGAGGACAAAGTCAATACGCTGACCAAAGCTAAAACAAAGCTGGAGCAGCAAGTGGACGAT
Seq A exon
GTAAGAACAAAAGCATACGGCTATTATGGGACAGTTGTGGAGATAAACATGGCTGGCAGCACACTAATGATCTCCTTTGGTTTAG
Seq C2 exon
CTGGAAGGGTCCCTGGAGCAAGAGAAGAAGCTGCGCATGGACCTCGAGAGAGCTAAGAGGAAACTTGAAGGAGACCTGAAGTTGGCCCATGATAGCATAATGGACTTGGAAAATGATAAACAGCAGCTGGATGAGAAACTGAAGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000023867:ENSGALT00000001420:22
Average complexity
IR
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.898 A=NA C2=0.796
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(29.4=100),PF135141=AAA_27=FE(7.8=100),PF0157614=Myosin_tail_1=FE(43.9=100),PF0003816=Filament=PU(9.5=47.5)
A:
NA
C2:
PF0157614=Myosin_tail_1=PD(1.0=4.1),PF135141=AAA_27=FE(6.4=100),PF0157614=Myosin_tail_1=PD(24.2=65.3),PF0003816=Filament=FE(16.3=100),PF0157614=Myosin_tail_1=PU(1.6=28.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAGCAGACACTGGATGACCT
R:
CATGGGCCAACTTCAGGTCTC
Band lengths:
182-267
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]