BtaINT0097294 @ bosTau6
Intron Retention
Gene
ENSBTAG00000037794 | MYH4
Description
myosin, heavy chain 4, skeletal muscle [Source:HGNC Symbol;Acc:HGNC:7574]
Coordinates
chr19:30087328-30087769:-
Coord C1 exon
chr19:30087651-30087769
Coord A exon
chr19:30087525-30087650
Coord C2 exon
chr19:30087328-30087524
Length
126 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGA
5' ss Score
8.68
3' ss Seq
CACACTTTCTGTTGGTCCAGGCC
3' ss Score
6.87
Exon sequences
Seq C1 exon
GTGAATTTTCACGACAGCTAGAAGAGAAAGATGCTCTGGTGTCTCAGCTATCCCGAGGCAAACAAGCATTTACACAACAGATTGAGGAATTAAAGAGGCAGCTAGAAGAGGAGACTAAG
Seq A exon
GTGAGAATTCTCCAGCTGATACCTTCAGTCACTTGAACTCTGCAGCATGTCACCCTATCCAACTCTACACTGAGACTATCAATGATCAGAACATAAACTTATAGAGCACACTTTCTGTTGGTCCAG
Seq C2 exon
GCCAAGAGTGCGCTGGCCCACGCCCTGCAGTCAGCCCGCCACGACTGTGACCTGCTGCGCCAACAGTATGAGGAGGAGCAGGAGGGCAAGGCCGAGCTGCAGAGGGCGCTGTCCAAGGCCAACAGCGAGGTGGCCCAGTGGAGGACCAAGTACGAGACGGACGCCATCCAGCGCACGGAGGAGCTGGAGGAGGCCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000037794:ENSBTAT00000061014:27
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.550 A=NA C2=0.424
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(4.5=100),PF0003816=Filament=PU(11.8=87.5)
A:
NA
C2:
PF0157614=Myosin_tail_1=FE(7.6=100),PF0003816=Filament=FE(22.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGTGTCTCAGCTATCCCGAG
R:
TCCGTCTCGTACTTGGTCCTC
Band lengths:
244-370
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development