GgaINT0129368 @ galGal4
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1P3X4]
Coordinates
chr18:386134-386759:-
Coord C1 exon
chr18:386641-386759
Coord A exon
chr18:386331-386640
Coord C2 exon
chr18:386134-386330
Length
310 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
3' ss Seq
CTTACAACTTCTCTCCACAGGCC
3' ss Score
11.52
Exon sequences
Seq C1 exon
GTGAATATTCACGCCAGGTGGAGGAGAAAGATGCTCTGATTTCTCAGCTGTCTAGAGGCAAGCAGGCATTCACCCAACAGATTGAGGAACTCAAGAGGCACTTAGAGGAGGAGATAAAG
Seq A exon
GTGAGGAGGTTTTCCAAAATTTTGTTTTATCCAGTGCGTCCCCCTTACCAAAAGGTGCTGCAGACATATTAAATTACAGAAACATTGTGTTGAGAGGGAGAAAAAAAGATAGTTAATTCAGAGCTAGTACGTTATCTTCCTGATATCTGCCACTTATCCTTAGTGATGTTGCAAATTCCCAGCTATTCCTTCTTCCTTCTGTATATTGCCATTATTCTCATGGAAGAATTATCCAGAGTCCAATAACTTTCCATCAGGACACTTTCCAATAAATTTCTATTCTACGTCATCTTACAACTTCTCTCCACAG
Seq C2 exon
GCCAAGAATGCCCTAGCCCATGGTTTGCAGTCTGCTCGCCATGACTGTGATTTGCTCCGGGAACAATATGAGGAGGAGCAGGAAGCCAAGGGTGAGCTGCAGCGTGCCCTGTCCAAGGCCAACAGTGAAGTGGCCCAGTGGAGAACCAAATATGAGACGGATGCTATTCAGCGCACAGAGGAGCTGGAGGAGGCCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000028102:ENSGALT00000001420:28
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.400 A=NA C2=0.455
Domain overlap (PFAM):
C1:
PF135141=AAA_27=FE(5.2=100),PF0003816=Filament=PD(4.4=32.5),PF0157614=Myosin_tail_1=FE(4.5=100),PF0003816=Filament=PU(12.2=90.0)
A:
NA
C2:
PF135141=AAA_27=FE(8.7=100),PF0157614=Myosin_tail_1=FE(7.6=100),PF0003816=Filament=FE(22.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAATATTCACGCCAGGTGGAGG
R:
CCTCCTCCAGCTCCTCTGTG
Band lengths:
310-620
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]