BtaINT0097296 @ bosTau6
Intron Retention
Gene
ENSBTAG00000037794 | MYH4
Description
myosin, heavy chain 4, skeletal muscle [Source:HGNC Symbol;Acc:HGNC:7574]
Coordinates
chr19:30084900-30085597:-
Coord C1 exon
chr19:30085473-30085597
Coord A exon
chr19:30085209-30085472
Coord C2 exon
chr19:30084900-30085208
Length
264 bp
Sequences
Splice sites
5' ss Seq
GAGGTACAT
5' ss Score
6.75
3' ss Seq
AAATGTTTCTTTTTCTAAAGGCA
3' ss Score
5.9
Exon sequences
Seq C1 exon
AGGAGATTTCTGACCTGACCGAGCAAATTGCAGAGGGAGGAAAGCATATCCATGAACTGGAGAAAGTAAAGAAACAAATAGAACAGGAGAAGGGTGAACTACAGGCTGCTCTAGAGGAAGCAGAG
Seq A exon
GTACATGTTTTGTTTGCTCACTTATGCATTATACATAAATTGAAAAATTAATAGCCACTGAGATCTATCATGCTGCAAACTTTCAGGGGATAACTCATGTTATTCAGTAAGAAATATTGAATTGTACTTTAGGAATATAGAACTAAAAGGTTAACTAAGCTGTATTAGAGTTTGTGAGTTTTTATAATGCCTTCTTGAAGAAATCATCATAATGTACCCCCCAAAAGCACTCCTTAGATAATTTAAATGTTTCTTTTTCTAAAG
Seq C2 exon
GCATCTCTCGAGCATGAAGAAGGCAAAATCCTTCGCATCCAACTTGAGTTAAATCAGGTGAAATCAGAGATCGACCGGAAAATCGCTGAAAAAGATGAAGAAATTGATCAGCTAAAGAGGAACCATCTCAGAGTTGTGGAGTCAATGCAGAGCACCCTAGATGCTGAGATCAGGAGCAGGAATGATGCCCTGAGGATCAAGAAGAAGATGGAGGGAGACCTCAATGAAATGGAAATCCAGCTGAACCATGCCAACCGCCAAGCTACTGAGGCAATAAAGAATCTTAGAAACACACAAGGAGTACTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000037794:ENSBTAT00000061014:31
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.667 A=NA C2=0.388
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(4.8=100),PF0003816=Filament=FE(13.9=100),PF045827=Reo_sigmaC=PD(23.9=81.0)
A:
NA
C2:
PF0157614=Myosin_tail_1=FE(11.9=100),PF0003816=Filament=PD(11.8=34.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGGGTGAACTACAGGCTGC
R:
GTTGGCATGGTTCAGCTGGAT
Band lengths:
292-556
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development