GgaINT0129372 @ galGal4
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1P3X4]
Coordinates
chr18:384768-385378:-
Coord C1 exon
chr18:385254-385378
Coord A exon
chr18:385077-385253
Coord C2 exon
chr18:384768-385076
Length
177 bp
Sequences
Splice sites
5' ss Seq
GAAGTAAAT
5' ss Score
3.59
3' ss Seq
ATTGTATAATTAATTGACAGGCC
3' ss Score
3.82
Exon sequences
Seq C1 exon
AGGAGATTTCTGACCTCACGGAGCAGATTGCAGAGGGAGGAAAGGCTATTCATGAGCTGGAGAAAGTCAAGAAGCAGATTGAGCAGGAGAAATCTGAACTTCAAGCCTCCCTAGAGGAAGCAGAA
Seq A exon
GTAAATCTTCATTTCTTAATTTTAGTATAAAAAATACATTGAGCATCATTATACCCTTTTGACACACAGGTAGCCTTTGTTTTCCTTTGCTGATTAGACATGATGCTGTATTAAATTCTTCAGCAGAACAGCTCTTGTAAACTTACTGATATTGTCAATTGTATAATTAATTGACAG
Seq C2 exon
GCCTCCCTGGAACATGAAGAAGGGAAGATCCTGCGCCTTCAACTGGAGCTCAACCAGGTCAAGTCTGAGATTGACAGGAAGATAGCAGAGAAAGATGAGGAAATTGACCAGCTGAAGAGAAACCATCTCAGAATTGTGGAGTCCATGCAGAGCACTCTGGATGCTGAGGTCAGGAGCAGGAATGAGGCCCTGAGGCTGAAGAAGAAGATGGAGGGAGACCTGAATGAAATGGAGATCCAGCTCAACCATGCCAACCGCATGGCTGCAGAGGCACAAAGGAACCTGAGAAACACACAAGGAGTGCTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000028102:ENSGALT00000001420:32
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.476 A=NA C2=0.553
Domain overlap (PFAM):
C1:
PF135141=AAA_27=FE(5.5=100),PF0157614=Myosin_tail_1=FE(4.8=100),PF0003816=Filament=FE(13.9=100),PF045827=Reo_sigmaC=PD(25.9=90.5)
A:
NA
C2:
PF135141=AAA_27=PD(5.1=36.9),PF0157614=Myosin_tail_1=FE(11.9=100),PF0003816=Filament=PD(10.9=31.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATTGCAGAGGGAGGAAAGGC
R:
GCTCTGCATGGACTCCACAAT
Band lengths:
253-430
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]