BtaINT0097314 @ bosTau6
Intron Retention
Gene
ENSBTAG00000009703 | MYH7
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1MM07]
Coordinates
chr10:21337385-21338569:+
Coord C1 exon
chr10:21337385-21337475
Coord A exon
chr10:21337476-21338172
Coord C2 exon
chr10:21338173-21338569
Length
697 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
3' ss Seq
CCCCTCCGTGTCCCACCCAGGCA
3' ss Score
8.6
Exon sequences
Seq C1 exon
GAAGGACTTTGAACTGAATGCCCTCAATGCGAGAATTGAAGATGAGCAGGCCCTGGGCAGTCAGCTGCAGAAGAAGCTCAAGGAGCTTCAG
Seq A exon
GTAAGGCCCCTGGGCTGGTCCTCAGCCTCCCGACCCTCTTCCACGCCGTTCTCGCCCAGCATCACAGGCACTGGCTCTGTGTCTGTGAAGGGAGATGCTGGCTATCACAAATCTCCCGTGGAACACTTCCAGGAGGGCCGGCTGATCCAAGGATGACATAGGAAGAGATCTGGAAACACTCACCGGTCTGGGGACAGAAATCCTAGCTTCCTAGGTCAGCTCTGGTGTAGCTGGTGACCGTGGGGAGCGCACTGCCAGCCTCTGGATCTCTGTGTCCTCCGCTGTTCCCCATGGCTTTTCAGGCCCCTTCAGCCCAGCTGGGCTGTGACTTCAGTTCTTACCTCTAGAGTGGACACTGTGTTGGGTCTTTAGCTGTCCGGTCAGACGAACCTGGCTCTCTCATTCCAACTTCAATTATTTTTGCCACAAAACTGCCTAAACTATCCCTGGAACACTGGTCCCTTTGTCCTTCTTCAAGAGCAACCACTTTCCTTCCCATAAAGAGAATGTAGCATGTTTTGGCCCAAAGGCAGGCTAACTCAACTATCCAAACCATCTCACTGAGGTGATCCTTTTATTTCTACTTGTCCCCTGGTGGGACTAAGCTGACAAGCCAGGAGCCTTCTAGAGCCCCGGGAGGGGGCTCCAATGGAGGGGTCAAGGGGCTGGGTCTGAGCCCCCTCCGTGTCCCACCCAG
Seq C2 exon
GCACGTATAGAGGAGCTGGAGGAGGAGCTGGAGGCTGAGCGCACCGCCCGGGCCAAGGTGGAGAAGCTGCGCTCAGACCTGTCCCGAGAGCTGGAGGAGATCAGCGAGCGGCTGGAGGAGGCCGGCGGGGCCACGTCCGTGCAGATCGAGATGAACAAGAAGCGCGAGGCTGAGTTCCAGAAGATGAGGCGGGACCTGGAGGAGGCCACGCTGCAGCACGAGGCCACGGCAGCCGCCCTGCGCAAGAAGCACGCCGACAGCGTGGCTGAGCTGAGCGAGCAGATCGACAACCTGCAGCGCGTGAAGCAGAAGCTGGAGAAGGAGAAGAGCGAGTTCAAGCTGGAGCTAGACGACGTCACGTCCAACATGGAGCAGATCATCAAGGCCAAGGTGGGCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000009703:ENSBTAT00000061306:24
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.032 A=NA C2=0.391
Domain overlap (PFAM):
C1:
PF0144213=Apolipoprotein=FE(15.2=100),PF0157614=Myosin_tail_1=FE(3.5=100)
A:
NA
C2:
PF0144213=Apolipoprotein=PD(65.7=97.7),PF0157614=Myosin_tail_1=FE(15.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTGAAGATGAGCAGGCCCTG
R:
CTGCAGGTTGTCGATCTGCTC
Band lengths:
354-1051
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development