MmuINT0103585 @ mm9
Intron Retention
Gene
ENSMUSG00000053093 | Myh7
Description
myosin, heavy polypeptide 7, cardiac muscle, beta [Source:MGI Symbol;Acc:MGI:2155600]
Coordinates
chr14:55598010-55599248:-
Coord C1 exon
chr14:55599158-55599248
Coord A exon
chr14:55598400-55599157
Coord C2 exon
chr14:55598010-55598399
Length
758 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
3' ss Seq
CCCTCTGTGTCCCTGGCTAGGCA
3' ss Score
9.56
Exon sequences
Seq C1 exon
GAAGGACTTTGAGTTAAATGCACTCAATGCCAGGATTGAGGATGAGCAAGCCCTGGGCAGTCAGCTGCAGAAGAAGCTCAAGGAGCTTCAG
Seq A exon
GTAAGGCTAGAGGAGAGGCTCCAGCTGAACGTGGCATCCCTGGCTGGCTCTCCGCTTCCCTCGACCCCCTCCAGGGTATGCTACTCCTGCAACAAGGAACTGTGTGCCCGTGAAAGGAGATAAAATGAACAAGGCTTCCTATGGGAATCCCTAGCTGGGGCTTGTATGATCCAAGGAAGACACAGGAAGAGAGCCTGGGAGGGGACGGGGGAGGTCTAGACCGCAGAACTCCTGGTTTCTTCTCAGTCTGTCTAGTCACGAGATCACAGAGCTCCACTACAGACCTCTGAGTCTCCATGCCTACTCTGTCACCTGGTGACTTTTAGGTCCCTTCAGCTCTTATGGCTCTTTCCTCTGTAGCAGGCATTGAATTAGGTCTTCAGCTATTTTATCAGACAAGTGTGGTTTTCTCAGCTACACTTTTGCTACTTTCCCCCACTAAATTGCTTGCAAAAACCCATGAGACACAGATTGTTGTTGTTGTTTGTTTGTTTGTTTGTTTGTTGTTGTTGTTGTTGTTTGGCCTTCTCTAAGATATCTGCTTTCTTCCAATAAAGAGAATGTGCACTGCTCAAGCCTAAAGGAAAGTTGACTGGGCTGCGCAAGACACCTTCCCCCAAATCCATCTATGTCCACCTTTCTAGTAACACATCAAACTTACGTGCTGTTCTCATAGACCAGGGATCTTTTAGAGCTCCAGGGCCGGCCTCAATGGAGGGGTGCAGGAAGCAGGTCTGACCCTCTGTGTCCCTGGCTAG
Seq C2 exon
GCACGCATCGAGGAGCTGGAGGAGGAGCTGGAGGCCGAGCGCACAGCCCGGGCCAAGGTGGAGAAGCTGCGCTCTGACCTGTCCCGGGAGCTGGAGGAGATCAGTGAAAGGCTGGAGGAGGCAGGCGGGGCCACATCCGTGCAGATAGAGATGAACAAGAAGCGCGAGGCCGAGTTCCAGAAGATGCGGCGGGACCTGGAGGAGGCCACGCTGCAGCACGAGGCCACGGCGGCGGCCCTGCGCAAGAAGCATGCCGACAGCGTGGCGGAGCTGGGCGAGCAGATCGACAACCTCCAGCGGGTGAAGCAGAAGCTGGAGAAAGAGAAAAGCGAGTTCAAGCTGGAGCTGGATGACGTCACCTCCAACATGGAGCAGATCATCAAGGCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000053093-Myh7:NM_080728:27
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.032 A=NA C2=0.562
Domain overlap (PFAM):
C1:
PF0003816=Filament=FE(10.6=100),PF0157614=Myosin_tail_1=FE(3.5=100)
A:
NA
C2:
PF0003816=Filament=FE(45.6=100),PF0157614=Myosin_tail_1=FE(15.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGATTGAGGATGAGCAAGCCC
R:
CTGGAGGTTGTCGATCTGCTC
Band lengths:
356-1114
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: