BtaINT0097323 @ bosTau6
Intron Retention
Gene
ENSBTAG00000009703 | MYH7
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1MM07]
Coordinates
chr10:21327820-21328078:+
Coord C1 exon
chr10:21327820-21327912
Coord A exon
chr10:21327913-21328014
Coord C2 exon
chr10:21328015-21328078
Length
102 bp
Sequences
Splice sites
5' ss Seq
TTCGTGAGT
5' ss Score
7.9
3' ss Seq
ACTTTTCTCCATGTCTCCAGGGG
3' ss Score
9.44
Exon sequences
Seq C1 exon
GGCACCCTGGAGGACCAGATCATCCAGGCCAACCCCGCCCTGGAGGCCTTTGGCAACGCCAAGACCGTCAGGAACGACAACTCCTCCCGCTTC
Seq A exon
GTGAGTGGGCCCTGCCTTTGGACTTGGGATTTGGGTTGGTCAAGGGATGTGTCAAACAGGAGCTCTCCCTCAACTCATCACCACTTTTCTCCATGTCTCCAG
Seq C2 exon
GGGAAATTCATTCGAATCCATTTTGGGGCGACCGGAAAGTTGGCGTCTGCAGACATCGAGACCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000009703:ENSBTAT00000061306:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.032 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(4.4=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(3.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGACCAGATCATCCAGGCCAA
R:
AGGTCTCGATGTCTGCAGAC
Band lengths:
146-248
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development