RnoINT0096544 @ rn6
Intron Retention
Gene
ENSRNOG00000016983 | Myh7
Description
myosin heavy chain 7 [Source:RGD Symbol;Acc:62030]
Coordinates
chr15:33654157-33654424:-
Coord C1 exon
chr15:33654332-33654424
Coord A exon
chr15:33654221-33654331
Coord C2 exon
chr15:33654157-33654220
Length
111 bp
Sequences
Splice sites
5' ss Seq
TTTGTGAGT
5' ss Score
5.91
3' ss Seq
CCTTCCATCCATCGCTTCAGGGG
3' ss Score
8.2
Exon sequences
Seq C1 exon
GGCACCTTGGAAGATCAAATCATCCAAGCCAACCCCGCTCTGGAGGCCTTTGGCAATGCCAAGACAGTTCGGAATGATAACTCCTCCCGATTT
Seq A exon
GTGAGTGATACCCCACCTTGAACTCGGGACTTGGGCTGGTTGAGGGATGGCCTCAAATGGGAGCCTTTCCCAGGCTCATTGCTACTCTCTTCCTTCCATCCATCGCTTCAG
Seq C2 exon
GGGAAATTCATTCGAATCCATTTTGGAGCAACAGGAAAGTTGGCATCTGCAGATATAGAGACCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000016983:ENSRNOT00000024186:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.097 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(4.4=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(3.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCACCTTGGAAGATCAAATCA
R:
AGGTCTCTATATCTGCAGATGCCA
Band lengths:
157-268
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]