MmuINT0103603 @ mm9
Intron Retention
Gene
ENSMUSG00000053093 | Myh7
Description
myosin, heavy polypeptide 7, cardiac muscle, beta [Source:MGI Symbol;Acc:MGI:2155600]
Coordinates
chr14:55609579-55609845:-
Coord C1 exon
chr14:55609753-55609845
Coord A exon
chr14:55609643-55609752
Coord C2 exon
chr14:55609579-55609642
Length
110 bp
Sequences
Splice sites
5' ss Seq
TTTGTGAGT
5' ss Score
5.91
3' ss Seq
TCTCCCATCCATCTCTTCAGGGG
3' ss Score
9.51
Exon sequences
Seq C1 exon
GGTACCCTGGAAGATCAAATCATCCAAGCCAACCCTGCTCTGGAGGCCTTTGGCAATGCCAAGACAGTTCGGAATGACAACTCCTCTCGATTT
Seq A exon
GTGAGTGATACTCCACCTTGAACTTGGGACTTGTGCTGGCTTTCGAAGGATGGCCTCAAATGTGAGCCTTTCCCAGGCTCATTGCTTCTCTCTCCCATCCATCTCTTCAG
Seq C2 exon
GGGAAATTCATCCGAATCCATTTTGGGGCAACAGGAAAGTTGGCATCTGCAGACATAGAGACCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000053093-Myh7:NM_080728:9
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.097 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(4.4=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(3.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTACCCTGGAAGATCAAATCATCC
R:
GGTCTCTATGTCTGCAGATGCC
Band lengths:
156-266
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: