BtaINT0097339 @ bosTau6
Intron Retention
Gene
ENSBTAG00000040053 | MYH7
Description
myosin-7 [Source:RefSeq peptide;Acc:NP_777152]
Coordinates
chr10:21364907-21367896:+
Coord C1 exon
chr10:21364907-21364997
Coord A exon
chr10:21364998-21367506
Coord C2 exon
chr10:21367507-21367896
Length
2509 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
3' ss Seq
GCCCCCCGTGTCCTGCCTAGGCA
3' ss Score
8.8
Exon sequences
Seq C1 exon
GAAGGAGTTTGACATTAATCAGCTAAACAGTAAGATTGAGGATGAGCAGGCACTGGCCCTTCAGCTGCAGAAGAAACTGAAGGAAAACCAG
Seq A exon
GTGAGGTTCTTCTGGGTGCGGCCACCGGGAAGCTCAATGGCGGTGAGACAACTGGGACTGCAGGAGCTGCTTAGGGTTCTAGACAGTATCTAGAACTCTGAGCTACCCAGAGGCCCCGTGAGCCCTGACTTCCAGGCACCTGGGAACATCAGCCTTCCCCCATTAGACCAATAATGTCTTATTTCATCTGGGCTATCTGGGGAGGTGGGTGGGGATCACACTTAACTAAAACAGCTTCTCTTGCTGAGCTATATTCTGCCTAATGGGTTTTCTCGTGCTTAGTCGCTCAGTCATGTGCAACTCTTTGTGACCCCATGGACTGTAGCCCGCCAGGCTCCTCTGTCCATGGGGATTCTCCCGGCAAGAATACTGGAGTGGGTTGCCATGCCCTCCTCCAGGGGATCTTCCCAATCCAGGGATTGAAACCAGGTCTGCTGCACTGCAGGCAGATTCTTTACCATCTGAGCCACCAGGGAAGCCCAGTGGCCTTTCTGCCCTGGGACCATTGGTAGGGCTTGGTTCTCTTCTAACCCTTCCTTTGGTGCTTCTTTCCCCTCATGGGGGTGAGAAAAGCCTTCATGGAGCCCCTTCTCATGGGGAGCTCTGTTCTTATTCTTCCCAGGTACTTGCCTTGCCACTAACGGGGGCTGAATCCCCACAGAGCACTTGAGTCAACTCCTGAGACCTTGAGCAAGTCACTTCCCCTCCTGCACCTCAGATTCTCCTCTCATCTGTAAAATGGGACTAATGACCCCTGCCTTGCAGAGGACCGGAAGAGATACTGTATAGGAACCCACTTTGTCAACCAGGAGGCTATGTATACATGTGATTTTAGTATAGCTCAGGTTACAGAAGTCAGCCAGCCCCTTGCAAGAAGATGTTCTTTTGTCTGCCCATGGCTTTCTCATCCCTCTGCAGGAGGAGACTGAATTAACAGCCAAAGTCTCCCTTGCCTTTCATGCACCCTGAATTTTAATGTGCTTTTAGTCCTGTGTTTGTCAGAAGAACCCTGGAGGCAAGGGAGGCAGGTACTCTCTTCCTCATTTCAAAGTTGCATGACCACATCTGGACACAGTGACTCCTAGGCCAAGGGGACTCAGCTATTGACCCCCTCATTTCCTGAAGAGATCGCAGCTGGTGGAGAGGGCCAATATCCCCTCCGCCTGAGGGTCCAGGCGGCAAGTGACACGTGAACACAGTTCCACTCCTCTCCTCTGGGGGCTGCTCAGGGGCTGGCCTGCCTTCAGTGATGCTCTTACTTCCCATCTTCTTGGATGCCCCTTCTGGGTTTTAGCCAGAGCATCCCCAGGTTCTTCTACCCTAGGTTTGGGCAGCCTCTTGGACCCAGAACAACAGTGTATTATCCTCACCCGATCTTGGCAATGCACTGTGGCTCCTTCTTCTTCCTGTCCAAGCTCTTGCCCCATCCTGGGAGCAGAGGTATGGTGGTCCTGTCTCTCCTGCTCCCAGGAGCCCCCACTCCCTACACATACACATTCCATCAACACCATCCATAACCACAGATGAAAGGACCCCACCAATCCTCCCTCTTTTGGACTTCCCTAGTGGCTCAGACGGTAAAGTGTCTGCTCACAATGCGGGAGACCTGGGTTCGATCCTTGGGTCGGGAAGATTCCGTGGAGAAGGAAATGGCAACCCACTCCAGTACTCTTTCCTGGAAAATTCCATGAACTGAAGAGCCTGATAGGCTACAGTCCATGGGGTCGCAAAGAGTCGGACACGACTGAGCAACTTCACTTTCACTTTCAAACCTCCTTTTTGCTCCTGGCTAGTCAGACAATAGATCAAAAGGTAGATGGGCCAAGGCTAAGGCCAAAAAAAATGAGGTGGGAACATGATACAAAAGAGGGCATCCTGCTAGCACCCTCCTGGCCTGGAAGGGAACAATCAAGCTGGAATCCAGCCATGGGCATAAATACAGTAAGCTCCAGAGCTCGAGGAATAGGCTGATTAGAACTTGGTAGTTAACTCAGAAGATTATAAAAATTTTTAATTGAGGCATTTTGTTGTAAATATTTGTAAAACACAATCACCAGCTTTCCTGTCTTATCATTAGCAGAGTCTAGTGAATCTGTGGAATTCCTGAGATTCAGGATCTCAGGGGATCTCAAGATCCCTCTCTGAACACAGATTCTCAGGATTCAGGGCGAGAGATGCTCAGATTGGGTCTGAGATGCCCCTCCAGGAAATGCCTTAAAAGTATGGCTTCACCCAAATTCTTATTGGTAGTCTATGCGTTATCAGATGTTTAGCAGCCTCCCTGGCCTTGCCCACTAAATGCCAGTAGCAACACCTCCTCTCCAAGTCATGACAATCAAAAATGTTTCCAGACCTTTTCAACTGTCCTCTGGGGCACAGAATGTCCCCTGGTGGGAACCACTGCTCCGCAGGACCTGGGCATCTTGGCCAAGAGCCTTCTAGAGCCCTGGGAGGGGGCTCCAATGGAGGGGCCTAGGTGCTGGGTCTGAGCCCCCCGTGTCCTGCCTAG
Seq C2 exon
GCACGCATAGAGGAGCTGGAGGAGGAGCTGGAGGCTGAGCGCACCGCCCGGGCCAAGGTGGAGAAGCTGCGCTCAGACCTGTCCCGGGAGCTGGAGGAGATCAGCGAGCGGCTGGAGGAGGCCGGCGGGGCCACGTCCGTGCAGATCGAGATGAACAAGAAGCGCGAGGCTGAGTTCCAGAAGATGAGGCGGGACCTGGAGGAGGCCACGCTGCAGCACGAGGCCACGGCGGCCGCCCTGCGCAAGAAGCACGCCGACAGCGTGGCTGAGCTGGGCGAGCAGATTGACAACCTGCAGCGCGTGAAGCAGAAGCTGGAGAAGGAGAAGAGCGAGTTCAAGCTGGAGCTGGACGACGTCACGTCCAACATGGAGCAGATCATCAAGGCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000040053:ENSBTAT00000007359:24
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.585
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(3.5=100)
A:
NA
C2:
PF0157614=Myosin_tail_1=FE(15.0=100),PF059116=DUF869=PU(31.4=36.9),PF0003816=Filament=PU(2.6=2.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development