GgaINT0132880 @ galGal4
Intron Retention
Gene
ENSGALG00000013781 | MYH7
Description
Gallus gallus myosin, heavy chain 7, cardiac muscle, beta (MYH7), mRNA. [Source:RefSeq mRNA;Acc:NM_001001302]
Coordinates
chr19:19957-20711:+
Coord C1 exon
chr19:19957-20047
Coord A exon
chr19:20048-20321
Coord C2 exon
chr19:20322-20711
Length
274 bp
Sequences
Splice sites
5' ss Seq
CAGGTCAGG
5' ss Score
7.2
3' ss Seq
TACCTGTCCATGGACTACAGGCA
3' ss Score
3.44
Exon sequences
Seq C1 exon
GAAAGACTTTGAACTCAACACACTCAATGCTCGAATTGAGGATGAGCAAGCGATTTCTGCCCAGCTCCAGAAGAAGCTGAAAGAGCTTCAG
Seq A exon
GTCAGGCTGAGGTGGAGTTGAAGTGTCTCTACTTGGTTGTGTTGAGCAATTTGGGTTGGGTTGAATTGGTTTGGGTAGAGGTGTCTCCAGTTGGGTGGATTGGGTTGAAGAATCTCCATTGGGTTGGGTTGAGTTCAGTTGAATGGACCCTCCGTCAGATTGGATTTGAAAAATATGCAACTGGTTGAGTTGGTTTGAAGACTCTCCAACTGGCTGAGTGGAAGAATTGGGCCCAGGGAAGCCCTGTGATGTTCTACCTGTCCATGGACTACAG
Seq C2 exon
GCACGGATTGAGGAGCTGGAGGAGGAACTAGAGGCAGAGCGGACGGGCCGGGCTAAGGTGGAGAAGCTGCGCTCAGAGCTGTTGCAGGAACTGGAGGAGACCAGTGAGCGGCTGGAGGAGGCAGGTGGTGCCACTTCAGTGCAGCTCGAGCTTAACAAGAAGCGGGAAGCCGAATTCCAGAAGCTGCGGAGGGACCTGGAGGAGGCCACATTGCAGCACGAGGCCACGGCTGCCACGCTGCGCAAGAAGCATGCTGACAGTGTAGCTGAGTTGAGTGAGCAGCTTGACAACCTGCAGCGTGTCAAGCAGAAGCTGGAGAAGGAGAAGAGTGAGCTCAAGCTGGAGCTGGATGATGTCAACTCCAACACGGAGCAGCTCATCAAGGCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000013781:ENSGALT00000022380:24
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.654
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(3.5=100)
A:
NA
C2:
PF0157614=Myosin_tail_1=FE(15.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCTGCCCAGCTCCAGAAGAA
R:
CAGCTACACTGTCAGCATGCT
Band lengths:
305-579
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]