MmuINT0103545 @ mm10
Intron Retention
Gene
ENSMUSG00000040752 | Myh6
Description
myosin, heavy polypeptide 6, cardiac muscle, alpha [Source:MGI Symbol;Acc:MGI:97255]
Coordinates
chr14:54950264-54952336:-
Coord C1 exon
chr14:54952246-54952336
Coord A exon
chr14:54950654-54952245
Coord C2 exon
chr14:54950264-54950653
Length
1592 bp
Sequences
Splice sites
5' ss Seq
CAGGTGACC
5' ss Score
6.54
3' ss Seq
TCCTTTGTATCCCTGGCTAGGCA
3' ss Score
8.27
Exon sequences
Seq C1 exon
GAAAGAGTTCGACATCAGTCAGCAGAACAGTAAAATTGAGGACGAGCAGGCCCTGGCTCTTCAGCTGCAGAAGAAACTGAAGGAAAACCAG
Seq A exon
GTGACCTGCTTCCCTGGGTGGTTGAAGGGAACTCAGAGCCTGGAGACTGTGTGTGTGTGTATGTGGGGGGGGGGGGTATTTAAGGTTCTAGACTATGTCTGGAACTCCAGGCAGCCGAGTGCCCAAGCACTCCTAAATACAGGAACACTAGCTTTCCCGTTATTGAGCAAGAATATGTCATCTTCTTAGCAAAACTGATTTGAGGGCGAATCATACCTACTAATAAGGCATCTCTTCCCCAAGATGCACTCTGCCTGTTGAACTTTCTCTTCTGGAACAACTCGGAGGACTCAGTTCTTCTCCAATCCGCTCTATTCTCTCTCTCTGCATAGGGATGAGGGAAACGCTCACAAATCCGCGTCCCAGGGACTGCCCTGTTCACAATCCTTGAATACTAACCTCAGCCTCTAACACAGGCTGAGGGCCACAGGCATCCCTGCATACAGTTAACTCCTCCTTGTGGAGTAAGTCACCCTGGTTCCTTGGCACTCGCTATTCTCACCTGCACAATGACAGTAAGGCTGTAACTAGGCTTACCAGCACTCATGTGTGGTTTGTTCCCATCTTGGCTCCATCTTCTTTATTTTACCCAGAATACTGAGCCATCCCCTGCATCTTCTGCCATAAGTCTGGGCAAGTTCTTTGGCCTCTAGGAGATAATAATGTCATTATTCTCACTGCGTCTATAGGCCCCTCCCTCTTCTGTGTAGGATCTGTGCTTCAAGTCCTACCTTCTCCACGTTGAGAGCAGAGGTGTAAGTCCCCTCTCTCCTACCTCAGGGTCTACTCTGTAGTTCATTAAAATTGTCCATTGCACCAAAAAAAAAAGAGAGAGAGAGAGAGAATTCCACAAACTTTCCCTATAGAGACAAAAGGCTAAAATGGCAAATGTGCATACTCCAGATTTAGTCAGGACCAAGTCTAAGGCCACACCAATGAGGTAGGGGTATGAAGAAGAGGGCATCTTATTGATACATAGCTTGGCTTGGAAAGGAGCAATCAAGCTACATCCTGGACCTAGGATACCTAAGGAATCCATGACATGGGGAATCTAGGTGATTAGACCTCATGGTTAGCTCAGATAATTGCAGTAGGATTTGGTTGTTCTTGAGGCAGCTTTGCTACAAATGTTAGTTTAAAAAAACAAAAAACAAAAAAAAAACCAAAAAAACAAAAAAACAAACAAAAAAAACCGAGTGCTCATTTCCTTGCCTTATAGTCAGTGGATCAGAGTCAGGTGAAACTGTTGGCTGTCTGAGGTTCATAATCTCAGGAGATCTCAGGATCCCGCTCCAAACACAGATGCTCAACACTTAGGCTGCAGATGCTCAAACTGAATCTCAGATGCTTTAGGGAAATCCTCCAAACTTTGGCTTCGGCCAATTTTCTATTCTAGGGTGTTTAGCAATGTCCCTTGCTTCTATAGCATCCTCCACACAGTTTAAAATGTCTCCAGCCATCACCAGCTATACCTAGTAGCTGAAAACCCGTGCTAGAGGTTTAGTGCGCATGGGAGCCTTTTAGAGCCCTGGAGCACGGGCCTCAAGGGAGGGGTCCAGGAAGCAGGTCTGATCCTTTGTATCCCTGGCTAG
Seq C2 exon
GCACGCATCGAGGAGCTGGAGGAGGAGCTGGAGGCAGAGCGCACAGCCCGGGCTAAGGTGGAGAAGCTGCGCTCTGACCTGTCCCGGGAGCTGGAGGAGATCAGTGAGAGGCTGGAGGAGGCAGGCGGGGCCACATCCGTGCAGATAGAGATGAATAAGAAGCGCGAGGCCGAGTTCCAGAAGATGCGGCGGGACCTGGAGGAGGCCACGCTGCAGCACGAGGCCACGGCGGCGGCCCTGCGCAAGAAGCATGCTGACAGCGTGGCGGAGCTGGGCGAGCAGATCGACAACCTCCAGCGGGTGAAGCAGAAGCTGGAGAAAGAGAAGAGCGAGTTCAAGCTGGAGCTGGATGACGTCACCTCCAACATGGAGCAGATCATCAAGGCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000040752:ENSMUST00000081857:25
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.161 A=NA C2=0.531
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(3.5=100)
A:
NA
C2:
PF0157614=Myosin_tail_1=FE(15.0=100),PF0003816=Filament=PU(10.7=10.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGACATCAGTCAGCAGAACAGT
R:
ACGCTGTCAGCATGCTTCTTG
Band lengths:
345-1937
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types