BtaINT0097343 @ bosTau6
Intron Retention
Gene
ENSBTAG00000040053 | MYH7
Description
myosin-7 [Source:RefSeq peptide;Acc:NP_777152]
Coordinates
chr10:21352034-21352566:+
Coord C1 exon
chr10:21352034-21352177
Coord A exon
chr10:21352178-21352409
Coord C2 exon
chr10:21352410-21352566
Length
232 bp
Sequences
Splice sites
5' ss Seq
TATGTGAGT
5' ss Score
5.56
3' ss Seq
TGCCCTGTCTCTCGTTTCAGACC
3' ss Score
12.46
Exon sequences
Seq C1 exon
ACGGTGACCGTGAAGGAGGACGAGGTGTTGCAGCAGAACCCGCCCAAGTTCGACAAGATCGAGGACATGGCCATGCTGACCTTCCTGCACGAGCCTGCTGTGCTTTTCAACCTCAAAGAGCGATACGCAGCCTGGATGATCTAT
Seq A exon
GTGAGTGCGCCCTACACACGGCGGGGAGTCTTCTGCACGGGGTCCAAAGTCGGCCAGGGCAACTTTCTCAAGGGGAGGGGACTGGAACTCTCCCTCTGCTCCCTCCCAATCCCTGGTTAGCTGCAGGAAGACAGGAGCCAGCTGGCATAACCAGGGACGCCTCTGCCTAGCACCACGCCCATCCCAGGCTCTCCCCTCCAACTTCTCGTGACTGCCCTGTCTCTCGTTTCAG
Seq C2 exon
ACCTACTCAGGCCTCTTCTGCGTCACCGTCAACCCCTACAAGTGGCTGCCCGTGTACAATGCCGAGGTGGTGGCCGCCTACCGGGGCAAGAAGAGGAGCGAGGCTCCTCCCCACATCTTTTCCATCTCCGACAACGCCTACCAGTACATGCTGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000040053:ENSBTAT00000007359:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.146 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0273614=Myosin_N=PD(16.7=14.6),PF0006316=Myosin_head=PU(4.1=58.3)
A:
NA
C2:
PF0006316=Myosin_head=FE(7.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGACCGTGAAGGAGGACGAG
R:
GTCAGCATGTACTGGTAGGCG
Band lengths:
295-527
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development