GgaINT0132858 @ galGal3
Intron Retention
Gene
ENSGALG00000013781 | Q90WH5_CHICK
Description
NA
Coordinates
chr19:7169-8475:+
Coord C1 exon
chr19:7169-7312
Coord A exon
chr19:7313-8318
Coord C2 exon
chr19:8319-8475
Length
1006 bp
Sequences
Splice sites
5' ss Seq
TATGTGAGC
5' ss Score
2.97
3' ss Seq
TCCCATGTCCCCTTCTCCAGACC
3' ss Score
9.57
Exon sequences
Seq C1 exon
ACCTTGACAGTGCCCGAGGCCGATGTGCACCCCCAGAACCCCCCAAAATTTGACCGCATTGAGGACATGGCCATGCTGACGTTTCTCCATGAGCCCGCCGTCCTCTACAATCTCAAGGAGCGCTATGCTTCCTGGATGATCTAT
Seq A exon
GTGAGCCTTCCCAGCAGCCCCTGCAGCAGACCCACAACCATAGCCTATAGAGAAGCCCCAAATCTATAAGGTGGCCCCAAAGCCTATAAAGATGCAGGAGCATTGTGGTTTCTCCATGAAGATCTGGGTGGTCACCTTGTGCCCATATGATTTGAGGCACCTAGTATGTGGTAGTTTTCCTCCAGATTTCTTTAGTCACCTAGAACTGGGATGTCCCATCTCCAGTCCCATTGCGCCACCTAGAATAGGCACATCCCATCTCAAACACTTTGTACCACCTAGAACCAGTCCCATTGGGTCACCTATAACTGTGATTTCCAGCCACATAGAACTGGGACAGCCCATTTACAGACTACTTGGGATACCTAGAACCAAGATCTTAAGGCCACCTAGAATTGGGATGTTCCATTTCAAGACCTCTTTGGATACCTAGGACTGTGATTTCCAGGTCCCATTGAGCCACCTAGAACAGAGATGTCCCATCTTTATTCCCCTTGTGGCAACTAAATGGAAATTTCAAGACCCTTTGTGTCATCTAGAACTGGGACATCCCATTTCCAGACTCCTTGGATTACCTAGAACTAAGATGTCAAGAACCACAAGGCCATCTAGAATTGGGATGTCCTGTGTCTAGACCCTCTGGGACACCTACAAACAAAGTTTACAGGCCTGTTCTGTCAACCAGAACTGGAATGTCACATCCTCTCTCTCCCCTTGGAACAACTAAAACGGAGATTTACAGACCTCTTGGGCCACCTAGAAGTGGGACTTCCCATCCCAAGCACTTGGGCACTCTAGAAGTGGGATGTCCCATCTTGAGACCCTTTGGTACACCTAGAAGCAAGATCTCAAGATCCCTAGGGCCACCTAAAACTGGGACAACCTATTTACAGACTGTGTGGGCCACTCAGAACTGTGATGTCCCATCTCCAGACCCACTGAGTCACCAAGAACCCTTTCTGGTGGGATGACACTTCATGATCCTGTCCCATGTCCCCTTCTCCAG
Seq C2 exon
ACCTACTCGGGGCTCTTTTGTGTCACTGTCAACCCATACAAGTGGCTTCCAGTCTACAATGCTGAGGTAGTGGCTGCCTACCGGGGCAAGAAGCGGACTGAGGTCCCACCCCACATCTTCTCCATCTCGGATAATGCATACCAGAACATGCTGACGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000013781:ENSGALT00000040718:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.295 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0273614=Myosin_N=PD(16.3=14.6),PF0006316=Myosin_head=PU(4.1=58.3)
A:
NA
C2:
PF0006316=Myosin_head=FE(7.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCTTGACAGTGCCCGAGG
R:
CCGTCAGCATGTTCTGGTATG
Band lengths:
301-1307
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]