RnoINT0096515 @ rn6
Intron Retention
Gene
ENSRNOG00000025757 | Myh6
Description
myosin heavy chain 6 [Source:RGD Symbol;Acc:62029]
Coordinates
chr15:33627309-33627839:-
Coord C1 exon
chr15:33627696-33627839
Coord A exon
chr15:33627466-33627695
Coord C2 exon
chr15:33627309-33627465
Length
230 bp
Sequences
Splice sites
5' ss Seq
TATGTGAGT
5' ss Score
5.56
3' ss Seq
GGCCCTGTCTTCTACTCCAGACC
3' ss Score
8.88
Exon sequences
Seq C1 exon
ACGGTGACTGTGAAGGAGGACCAGGTGATGCAGCAGAACCCTCCGAAATTCGACAAGATCGAGGACATGGCCATGCTGACCTTCCTGCATGAGCCAGCTGTGCTCTACAATCTCAAGGAGCGCTATGCGGCCTGGATGATCTAT
Seq A exon
GTGAGTGGCTGCTATACCCTGCGGGGACTCGGTAGAGGCCTTCACAGGCCAGGGGACCTGAAAGGAGGGGGTAAAAAAGCTCTCCAAAGTCCTAGTGTCTTCTCACCATGCCTGCCTGATTCATCCTAGCAAAATGAAGGGAACCAGTTCAAGTGGCCAGGAGTGACTCTGACTGCCACCACTGCCAATCTTAGTCTCCCCTTACATGTCGGCCCTGTCTTCTACTCCAG
Seq C2 exon
ACCTACTCAGGCCTCTTCTGTGTCACCGTCAACCCCTATAAGTGGCTGCCAGTGTACAATGCGGAAGTGGTAGCTGCCTACCGGGGCAAGAAGAGGAGCGAGGCTCCACCCCACATCTTCTCCATCTCTGACAACGCCTATCAGTACATGCTGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000025757:ENSRNOT00000023302:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.250 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0273614=Myosin_N=PD(16.7=14.6),PF0006316=Myosin_head=PU(4.1=58.3)
A:
NA
C2:
PF0006316=Myosin_head=FE(7.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGACTGTGAAGGAGGACCAGG
R:
CAGCATGTACTGATAGGCGTTGT
Band lengths:
293-523
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]