MmuINT0103560 @ mm9
Intron Retention
Gene
ENSMUSG00000040752 | Myh6
Description
myosin, heavy polypeptide 6, cardiac muscle, alpha [Source:MGI Symbol;Acc:MGI:97255]
Coordinates
chr14:55582339-55582876:-
Coord C1 exon
chr14:55582733-55582876
Coord A exon
chr14:55582496-55582732
Coord C2 exon
chr14:55582339-55582495
Length
237 bp
Sequences
Splice sites
5' ss Seq
TATGTGAGT
5' ss Score
5.56
3' ss Seq
GGCCCTGTCTTCTACCCCAGACC
3' ss Score
8.93
Exon sequences
Seq C1 exon
ACGGTGACCATAAAGGAGGACCAGGTGATGCAGCAGAACCCACCCAAGTTCGACAAGATCGAGGACATGGCCATGCTGACCTTCCTGCACGAGCCGGCTGTGCTGTACAACCTCAAGGAGCGCTACGCGGCCTGGATGATCTAT
Seq A exon
GTGAGTTGATGCTACACACTGCAGGAACTCGGTAGAGGCCTATACGGGTCAGTGGACTCGAAAAGAGGGGGTTAAAAAGCACCCCAAAGTCCCAGTGTCCTCTCATCCAGTCTGCCTGGTTCATCCTAGCAGAATGAAGGGAGCCAGCTCAAGTGGCCAGGGGTGCCTCTGACTGCCACCACTGCCTTGCTTAGTCTCCCCTTAACAGCCACATGTTGGCCCTGTCTTCTACCCCAG
Seq C2 exon
ACCTACTCAGGCCTCTTCTGCGTCACCGTCAACCCCTATAAGTGGCTGCCTGTGTACAATGCGGAAGTGGTGGCCGCCTACCGGGGCAAGAAGAGGAGCGAGGCCCCTCCTCACATCTTCTCCATCTCTGACAACGCCTATCAGTACATGCTGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000040752-Myh6:NM_001164171:4
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.333 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0273614=Myosin_N=PD(16.7=14.6),PF0006316=Myosin_head=PU(4.1=58.3)
A:
NA
C2:
PF0006316=Myosin_head=FE(7.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGTGACCATAAAGGAGGACC
R:
CAGCATGTACTGATAGGCGTTGT
Band lengths:
296-533
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: