DreINT0099892 @ danRer10
Intron Retention
Gene
ENSDARG00000076075 | myh7ba
Description
myosin, heavy chain 7B, cardiac muscle, beta a [Source:ZFIN;Acc:ZDB-GENE-100914-2]
Coordinates
chr11:24972738-24974073:-
Coord C1 exon
chr11:24973930-24974073
Coord A exon
chr11:24972895-24973929
Coord C2 exon
chr11:24972738-24972894
Length
1035 bp
Sequences
Splice sites
5' ss Seq
TATGTTGGT
5' ss Score
-9.36
3' ss Seq
TTGTCATCTCCTCATGGCAGACG
3' ss Score
7.5
Exon sequences
Seq C1 exon
TGCTTAACTGTCAAGGAAGATGACATTCAACAGATGAACCCGCCAAAGTTTGACCTGATAGAGGACATGGCCATGCTCACACACCTGAACGAAGCGTCGGTGCTCTTCAATCTGCGGAGGCGATACAGCAGTTGGATGATTTAT
Seq A exon
GTTGGTACCATCACATCACACAGCTCAAATATAAAAAAAATGATCTGCCCTTTCTCACTAATCTTTGATGCTACAAATAACCTGACCGGAGTATTAAACATAGAGGGGCAGCACTATTCATAGAACTTTACGGTCACAGCAATGAATTTAACACTTGCCTTTGCCAAGGGACAAATACAAGTGAATTCCCCAGAGGCATGTCCTTTATAAGTGCCACTATCAAAGTATTTCATTAATTCATATCAGGGAGGTAAAGGGTTCCTGAAGAGCATGTAAACTGAATTTTGTATGGTGTGCTTAAGGTTAAGTTCAAGGGTGGACAATCATTCTTTAATAAACTCCAAATTGTACAAATTCATGCAAAATGTTCATATTCCAGAACAGTTTTTATGACATTGGGTCTTCAATTTGATTTCAGAAAAAAAGGTTTCTTTTATTTTTAAATTCTATTTTGGGAGTCTGTGTCATAAATATAATATTAAGCACTAGTTTTACTAACAACTCTTAAAATAACCATTATTGATGTGAAGATTTGTGTACTTGTATATTTATTTTTATTTATTTTATTTTATTTATTTTTTATTTATTTATTATTATTTATTTTTTTATATGTTCAGAATTGACTAAAGACGTGCAGTGAAAAACTGGCGATGAAAAGGCATGGGAGCAGTTATTCCTGCAGCTGACATACATATGCATTTGTTAGAGTTTTCCTTTCAGACAGATAATTTATGAGAGGGGTATTTAAGGACATTACACAACATGATTTACAGTACTAAGATTTGTGGTCATCAATTTACTGGTATTTGCGCCATCGTTCATCGCCCAAAGTAAAAGTAAAAATAAAACAACACAATGACCCTGTACACAAATCTTTCATTTTAAGATTTGAAATATATTAATATCACTGCAAGAAATATGTAAATACTCTAGGACTTATTATTAACCCTTCATCTCTTTATCCATACAAAACCAAGACATTTATTGTGACTTGATACAGTACTTGGTGTTAATCTTGTCATCTCCTCATGGCAG
Seq C2 exon
ACGTACTCTGGGCTCTTCTGTGTGACCGTGAACCCATATAAATGGCTCCCCGTCTACACTGCCCCTGTAGTGGCTGCCTACAAAGGCAAACGCCGCTCGGAGGCTCCACCTCACATCTACTCCATTGCTGACAATGCCTACAATGACATGTTACGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000076075:ENSDART00000097316:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.042 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0273614=Myosin_N=PD(16.7=14.6),PF0006316=Myosin_head=PU(4.1=58.3)
A:
NA
C2:
PF0006316=Myosin_head=FE(7.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCTTAACTGTCAAGGAAGATGAC
R:
TGCGTAACATGTCATTGTAGGCA
Band lengths:
301-1336
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]