MmuINT0103637 @ mm10
Intron Retention
Gene
ENSMUSG00000074652 | Myh7b
Description
myosin, heavy chain 7B, cardiac muscle, beta [Source:MGI Symbol;Acc:MGI:3710243]
Coordinates
chr2:155613433-155614195:+
Coord C1 exon
chr2:155613433-155613576
Coord A exon
chr2:155613577-155614038
Coord C2 exon
chr2:155614039-155614195
Length
462 bp
Sequences
Splice sites
5' ss Seq
TACGTGAGC
5' ss Score
4.3
3' ss Seq
TGTGAACTCTCTCTCTTCAGACA
3' ss Score
9.34
Exon sequences
Seq C1 exon
GTGCTGACAGTGCGTGAAACGGAGATGCAACCCATGAACCCACCCCGTTTCGACTTACTGGAGGACATGGCCATGATGACGCACCTCAACGAGGCTGCAGTGCTGCATAACCTGCGGCAGCGCTATGCTCGCTGGATGATCTAC
Seq A exon
GTGAGCCCTGGGCAGGGACGGCTCAGTGGTGGGCGGGGCCACTAATGGGGCGGGTCTAAGGGAAGAATCGTGACTAGGAGTGGCTAGGCTAGAAGAGGGCTCTGAGACTGAAGGAGCAGAACCGAAGAGTGGCAAAGGAGAGGGCTAGAGGGACAAACTGTAGGTGAATGAAGGGGCGTCCTAGATAGATGACTTGGTGATGTCTAGGGTCTTGGAAGCAGAGCCAGGGCCTTGTGTGGAGCCTGGCTGCTGGCACCTCTGAAGGGTCAGCAGAGGGTTTTGAGGTCGGTCAGTCGGTTATGAGCCTTCTTGCAGCTCAGGCTGGAACAGAAGAAAGGGCCGTGCATGGCATATCTGGAGGTTTCTAGAATATTGCAGGGGTCATGGTGGGTCTGGGAATGGGACCTTGGACATCTCTCTTGCTGATCCTAAAAGCTCTGTCTGTGAACTCTCTCTCTTCAG
Seq C2 exon
ACATACTCGGGCCTCTTCTGTGTCACCATTAACCCATACAAATGGCTCCCGGTCTACACAGCTGCTGTGGTGGCTGCCTACAAGGGCAAGCGTCGCTCCGAGGCCCCACCTCATATATATGCAGTGGCAGATAATGCCTACAACGACATGCTCCGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000074652:ENSMUST00000092995:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.146 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0273614=Myosin_N=PD(16.3=14.6),PF0006316=Myosin_head=PU(4.1=58.3)
A:
NA
C2:
PF0006316=Myosin_head=FE(7.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGACAGTGCGTGAAACGGAG
R:
GGAGCATGTCGTTGTAGGCAT
Band lengths:
295-757
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types