GgaINT0097018 @ galGal4
Intron Retention
Gene
ENSGALG00000005644 | MYO1G
Description
unconventional myosin-Ig [Source:RefSeq peptide;Acc:NP_001026132]
Coordinates
chr2:4038249-4039247:+
Coord C1 exon
chr2:4038249-4038560
Coord A exon
chr2:4038561-4039038
Coord C2 exon
chr2:4039039-4039247
Length
478 bp
Sequences
Splice sites
5' ss Seq
GCGGTATGG
5' ss Score
7.67
3' ss Seq
ACTGCCACCCCTGTGTGCAGGTT
3' ss Score
7.92
Exon sequences
Seq C1 exon
CTGGTGCTGGTGTCCAAGTGCTTTGGGGCATGGGGACAAATCCCCACCCTGCCCTTCTGTGTGTCTCTTGCCCTGTCACCACCACACTGATCCCCATGGGAGGTGACAGTAGGGCCGGGCCCCGCGTCACACGCGCCTGCGCTTCTGCTTGGGCGGGCAGAGGTGCAGGAAGCAGCACAGAGGGGGGAAGTGGGTGCCTGTGGGCTGTGGGCGCAGCATGGCGGAGCTGGAGGGCCCCGAGTTCGGCAAGGCTGATTTTGTCCTGCTGGACGAGGTCACCATGGAGCACTTCATGGAGAACCTGCGGCTGCG
Seq A exon
GTATGGGGATGCAGGGAGAGGCAGGATGGGTGATGTTGGGATGGGCGAGGCTGAGGTGGGGTGGTGCAGCCAGGATGCAGTGCTCAGCATCGTGGTGATGGGGATACCGCCAGCCCTGGGCACCCCAAATCCTTCATGTAGGTCAGGGTGTGGTCCTGAGGTGCAAACCCTGACCCAAAAGGAAATGTCTGTGCTGGGCAGCGTCCTGCTGCTGGCTGAGGGAAGGGGAGGCATGGCCCTGGAGCTGCGTGGGGGATGTCCGGGTAGGCGTGGGGGTTGTGTGTGCATGACCGTGCACAGCAATGTGCATGTGTGTGTCTGCCTGTCCTGGTGTATGTGTGCCACCCTGGTGCCCTGCACTTCCTGCCTGCACCCATGGGTGCTGCCTACAGGAAGGGCTGCTCTCCTTGTGCCCTGTACGGCCCCACAGCATGAAGCTCGGGGACACACCTTGTCCCACTGCCACCCCTGTGTGCAG
Seq C2 exon
GTTCTCAAAGGGCCGCATCTACACCTACATTGGGGAGGTGGTGGTGGCCATGAACCCCTACCAGCCGCTGGAGCTGTACGGCCCCTCTGTGGTGGAGCAGTACCGGGGTCGTGAGCTCTACGAGCGCCCGCCGCACCTCTTCGCGTTGGCTGATGCCGCCTACAAGGCCATGAAGCGCCGTGCCAAGGACACCTGCATCGTCATCTCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005644:ENSGALT00000009051:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=PU(3.1=65.6)
A:
NA
C2:
PF0006316=Myosin_head=FE(10.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCTGGTGTCCAAGTGCTTTG
R:
CCACCTCCCCAATGTAGGTGT
Band lengths:
349-827
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]