MmuINT0104272 @ mm9
Intron Retention
Gene
ENSMUSG00000020437 | Myo1g
Description
myosin IG [Source:MGI Symbol;Acc:MGI:1927091]
Coordinates
chr11:6418982-6420961:-
Coord C1 exon
chr11:6420745-6420961
Coord A exon
chr11:6419191-6420744
Coord C2 exon
chr11:6418982-6419190
Length
1554 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGAT
5' ss Score
7.25
3' ss Seq
TCTTGTTATGCTATACCCAGGTT
3' ss Score
5.29
Exon sequences
Seq C1 exon
ACTTCCTACTTTACTGAAGTACTGCAGTAGTCAGGCAGGGCTGGGCCTCCCCTTTCTGCCTTCCCCTTCACCTCTGTACAGAAAGCTCTGGCGACCTGCCTTGGATGCTTGCAGTGGGCAGGATGGAGGACGAAGAAGGCCCTGAGTATGGGAAACCAGACTTCGTGCTTTTGGATCAACTGACCATGGAGGACTTCATGAAGAACCTAGAGCTCAG
Seq A exon
GTAGATGTGAGGTGGGGGTGGGGATGCGGTACTGGGCTTCTTTCCTTCCTTTCCTCCCTTATCATCCACACAGACCTGAGAGAAGCCCTGAAGGTACCCTGGTCCCATCGTCAGGAATGGGGACAAGGCTACACATACCTAGACAATACAGGCTGAAATGATAGCATCTCCAGGAGATAATGGCCACTCAGAAAGTAACCAGCTGTCAGGAATGGAGCTGCCCAGCCACCCTCACAACACCCTGGTTGACAAGCCCAGAGTCCTGAGGAAGACAGGCAAAGGCATGGGGACCAGGAATGTACTGCATCTCCTCTCTGTCACCTGCTGATGCTTTCCCCCTGGGTCCCATGTGTGACCCGACTTGAGTTTCCTTAGGAACTCCAAAATGAAGTGCCCTCCACCCCAGAATCGCAATAATCGAAGCAAGCTGATATGATGCTGATATGATGTTCTGGGTTGGGAGTTGTTCATGGGAGGGGTCACAGGCTAGGACTAGGAGAATTGACAGTGCAGCCTGCTTTCTCACTGAAAAAAGCAGGGAGGGGTCCAGGAGCTAGAAGCACAGCATGTTAAATGGCCTTGTGTGCGGCTGGACTTCATACACACCTCCTAGGGAGGATTGTTGTGTGCTAGGAAGCTCCTTAGAGAGCAACTGGGGACCAGGAATCTCACTAGGTGCAGAGATGGAGGTCCTAGGCTGCCACATGGAGAGCTTTATCCAGGAAATGAGTTCAATGCTTTGTTAGACTGCCTCATTCTCTCGAAAAGCAAGCTCACAAGCATGCCCTCCATGCTTTGTATGCTGAGCCGAGGAAGACAGTGGCTGCAGGTCACAAAACTTGTAGTCCCAGGGCGTGACTTGTCAGAGGGGGCAGAGAAAGAGGAACCCTGAAGAGGCCTGCCTGGGGTTGAGCGGGCCCCACACACCGAGAGGACAGTTGGGGCCCCAAGGAGGCTAGTACTCCTCCCAGAGCACAAAACCCAAGAGAGGTACAGCCCTAGGTTCCTGCTTCTAATATGGTTAGTAAACGGAAGGGTGGAGGAGTTTGAGATGTGCTGGAGAGGGACGGTGGCCATGGCTGGGGTTGCAAAGACTAGCAAATCACCACGCTATGATTTGGGTGGGGCAGGGCGAGTCCCCTTCCGGATCTGGTCCCGCCTAGACTCTGAGACAGGAAACAACCAAGCCCCCCACCCCCCCCACCCCCCACTCTCTGGAAGAGTCCCCTTTTCACAGTCTCAGCCCAACTGCCCTGTAGGAGTCACCTGGGAAAGATGACCCCTGCAGGGCCGTTACCTTTGTGGGATAGATATTCCTGGTTCCTGAGACCTGAGCATCCTGGCAGAGAGCAGTGTGGACCACACCCTTTGCACTGTGCTGAGGGCTGCTCTGGGTGGCTCAGCTTACTGAGGATGGCACCAAGGGGTCTTAAGTCAGTGAGGTCCCTTTTCTCTTCTCTATGCTCTTTCTGGGAGGGGGTGCTGACTGCTCGAGGCCTCCCACGTGGGCCTCTCATGGATGTGAATATAGAAGTCTTGTTATGCTATACCCAG
Seq C2 exon
GTTTGAGAAGGGCCGTATCTATACCTACATTGGTGAGGTGCTCGTATCCGTGAACCCCTACCAGGAACTGCCATTGTATGGGCCAGAGGCCATTGCCAAGTACCAGGGCCGCGAGCTCTATGAGCGACCACCTCATCTTTACGCCGTGGCCAATGCTGCTTACAAGGCAATGAAGCGCAGATCCAGGGACACCTGCATCGTCATCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000020437-Myo1g:NM_178440:1
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.179 A=NA C2=0.020
Domain overlap (PFAM):
C1:
PF0222312=Thymidylate_kin=PU(59.3=92.1)
A:
NA
C2:
PF0006316=Myosin_head=FE(10.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTTCTGCCTTCCCCTTCACC
R:
GCGCTTCATTGCCTTGTAAGC
Band lengths:
344-1898
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: