RnoINT0097137 @ rn6
Intron Retention
Gene
ENSRNOG00000059140 | Myo1g
Description
myosin IG [Source:RGD Symbol;Acc:1306016]
Coordinates
chr14:86794484-86796378:-
Coord C1 exon
chr14:86796175-86796378
Coord A exon
chr14:86794693-86796174
Coord C2 exon
chr14:86794484-86794692
Length
1482 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGAC
5' ss Score
6.89
3' ss Seq
TTCTGTTCTGCCATACCCAGGTT
3' ss Score
7.31
Exon sequences
Seq C1 exon
CTACAGTTCTGCAGGAGTTAGGCAGTGCTGGGCCTCCCCTTTCTGTCTTCCCCTTGACCTCTGTACAGAAAGCTCTGGCGTCCTGGTCTGGAGGCTTCCAGTGGGCAGGATGGAGGATGAAGAAGGTCCTGAGTATGGGAAACCAGACTTTGTGCTTTTGGACCAACTAACAATGGAGGAGTTTATGAAGAACCTACAGCTCAG
Seq A exon
GTAGACATGACATGGGGGTGGAGGGTGCTGGGTTTCTTCCTTCCTTTCCTCCCTTCTCATCATCCACGCCGACCTGACAGAAGCACGGAAGGTACCCTGGTCCCATCGTCAGGAATGGGGACAGGGCTACACATACCTAGACAACACAGGCTGAAATGATAGCATCTGCAGGAGATAATGGCCACTCCGAAAGTAACCAGCTGTCAGAAATGGAGCTGCCCACTCCCTCTCACCACACCCTGGTTAACAAGCCCAGAGCATGATAACCTCTGAGAAAGATGGGCAAAGGCATGGGGACCAGGAGCTATACTGCATTTCCTCTCTGTACCTGCTGATGCTTCTTCTCTGGGTCTCATGTGGGACCTGACTTGAGTTTCCTTAAGGAACTCCAGAATGAAGTGGGCTCCACCCCAGAATCCCAACAATCGAGTTGTTCCTGGGAGGGGTCCCAGGCTCACTGAAAAAGGCAAGGAGGGGTCCAGGAGCTAGAAGCAGGGCATGACAAATGGCCTTTTGTGCGGCTGGACTTCATGCCCACCTCCGAGGGAGGTCTGTGTGTGCTGGGAAGCTCTTTAGAGAGCAACTGAGGACCAGGACTCTCACCGGGCACAGAGATGGAGCCCCGAGGCTGACACATGGACAGCACTATCCAGGAAATGAGTTCCTTGCTTTGTTAATCTACCTCATTCTCATGAAAAGCAGGCTCACAAGCATGCTGTCCCTGCTCTGTGTGCTTAGCAGAGGAGGACAGTGGGTGCACGTCACACAACTTGTAGTCCCTAGGAGTAACTTGTCAGAAGGGGCAGAGAAAGAGGAACCCTGAAGAGGCCTGCCTGGGGTTGGGCGGGCCCTACACACCCAGGACTGTTGGGGCCCCAAGGAGTAGGCAGGCCAGGACCCCTCCTAGAGCATGAAATCCAAGAGAGGCACAGCCCTGGGCTCCTGTTCGTAACTTGGTTTGTGAACAGAAGGGTGGAGGAGTTGAGATGGGATGGAGAGGGGTGGTGGCCATGGCTGGGGGGTGCGAAGACCAGCAAATCACCACCCTATGATTTGGGTGGGGCAGGGTGAGTCCCCTTCCGGATCTGGTCCCGCCTAGACTCTGAGACAGGAAACAACCAAGGCCCCCCTTCTCTGGGAGAGTGCCCTTTTCTCAGTCTCCGCCCAACTGCCCTGCAGGGGGTCACCTGGGACCAGCCCTGATTCTTGTGAAAGACCCAGGACTCTTTTCACCTTTGTGGAATGGATCCTCCTGGTTCCAGAGACCTGAGCATCCTGGCAGAGAGCAGTGTGGACCACACCCTTTGCACTGTGCTGAGCACTACTCTGGGTGCTTACTCAGGATGGCACCAAGGGGTCTTAAGTCAATGAGGCCCCTTTTCTCTTCTCTTTCTGGAAGGGAGTGAGGACTGCTTGAGGCCTGCCATGTGGGCCTCTCATGGATGTGACTATAGAGGCCTTGTTCTGTTCTGCCATACCCAG
Seq C2 exon
GTTTGAGAAGGGCCGTATCTATACCTACATTGGCGAGGTGCTGGTATCTGTGAACCCCTACCAGGAACTGCCATTGTATGGGCCAGAGGCCATTGCCAAGTACCAGGGCCGTGAGCTCTATGAGCGACCACCTCATCTTTACGCCGTGGCCAATGCTGCTTACAAGGCAATGAAGCGCAGATCCAGGGACACCTGCATTGTCATCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000059140:ENSRNOT00000092021:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.156 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=PU(3.1=65.6)
A:
NA
C2:
PF0006316=Myosin_head=FE(10.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCCCCTTTCTGTCTTCCCCT
R:
GCGCTTCATTGCCTTGTAAGC
Band lengths:
349-1831
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]