BtaINT0098038 @ bosTau6
Intron Retention
Gene
ENSBTAG00000006377 | MYO1G
Description
myosin IG [Source:HGNC Symbol;Acc:HGNC:13880]
Coordinates
chr4:77317209-77318999:+
Coord C1 exon
chr4:77317209-77317321
Coord A exon
chr4:77317322-77318790
Coord C2 exon
chr4:77318791-77318999
Length
1469 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGAC
5' ss Score
6.89
3' ss Seq
ACCTGCCCTGCCTGTGCCAGGTT
3' ss Score
8.85
Exon sequences
Seq C1 exon
TGCTTCCCTGCCGGCAGGATGGAGGACGATGAAGGCCCTGAGTGTGGCAAGCCCGACTTTGTGCTTTTGGACCAAGTGACCATGGAAGACTTCATGGAGAATCTGAAACTCAG
Seq A exon
GTAGACCCAGGGCATGGGCTCCCCTTCTCCCTGTCCCCATCCCCAACTGGTCTCCATCAGCCCACCATCTGGGTGACCTCAGGGAGATGCGGGGGCTGGAAGGACTGTCCCCTCAGGGCCAGGACAGTCAGCCAGTGCTAGAGCAGGCTCCCCAGGCCTGTGCCTCCCACACAGCCCAGGTGTCTCCTGAGCCTTCCTCTTGGCAGGGGCAGGCAGGTGCCAGGCATCTGGACCGAGTGGCCGCTCCATCTTCCTAGTGAGGCTGTGCTGAGCCCTAGGGGCTCAAAGGGAAGTGGTCAGGCGCCTCCCTGGGGTGCAGATGGATAAACTGAGATGACACTCTCAAAGGGACATGTGGGGTGCTTCAGGGTGTGGCTGGTAGAAGTGACACGGGGCCCTATTTGCCGGAGGGCAGAGGGCAGGGAGGAGCTGCTGGTGGCGATGAGGGGTGGCAGCAGGAGCTGGCTTCATCCCTGAACAGCCATGAGGAGCAGATGGTAACCCACTGTGCAGAGCCTAGGGACAGGTCCCCCTGAGCCCAGATTGTTGAAGTCAGACACCACGGGCCCTGAGTCAAGGCCAGGGTTGTGGGATGGAGAGTCAGACCGGAAATGAGCTTCTCTGTTAGAACTAAGCAGATTACAAACTAGCTTCTGAGACAGGTACTACCATCACCATATTACCACTGGGACCCTGACCCCGGGGCCACACGGCTTGCAGGTGGAGAGTCTGTCTCCAGCAGGTCCTGGGTGTGCAGGGAGCCAAACCGGAGAACTCCCGTGTCTGAAGCAGTGGAGGAAGGGGAACCCGGGACCGGCAGTCAGGGACAGGGCGGGTCCCAGACACCGCAGGGAGCAGGGGGGCTGGGGCTCCTCCCAGAGCAGAAGGGTCAGGAGACAAGTGACACAGGCACCCTCGCAGGTGACTAGGTTCACGCTGAGGGTCGAGAGGTCTGAGGAAGTGCAGGGTGGGGCTGGCGGCACTGCTGCCCCAGGCACCCTCCCAGTGCCTCCCAGTCTGCTGTCTGGGTGGGGCTGGGCGGGTCCTGCTTCTGCTTCTGGGTCCCCGCCCAGGTCTTGAGACGGAAACAACTGGAGGTCCCTCCCTCCACCTCCCACCCCTATCTCCTCCCTGGGCTCAACTCCATCACCTAAGCTGCCTGTTCTGCCTGGCCCAGTGTGGCCTTGGGCAAGTCAGTCCCTTGATAAAACAGAGTCAGGATTCCTGTGACTCCACCCCATGGAGAGCAGCTTGGACCCCAACACTACCTTGTGTGTGGGTGAGGCTCCTAGCAAGATGGCAACGGAAGACTCAAGTCAACCCCACCACTTCCCCCCCACACACTTCTCTGCCCTCAGCCCTGGGGGTGGGCCAGGGCCCCAAGACTTCCCACCTGGGCCCAATGCCCCAGAATCTATGTGTGTGTCCCCTTGGCCCTGAACACTGAGGACCTGCCCTGCCTGTGCCAG
Seq C2 exon
GTTCGAGAAGGGCCGCATCTACACATACATCGGTGAGGTGCTGGTGTCCGTAAACCCCTACCAGGAGCTGCCCCTGTACGGGCCGGAAGCCATTGCCAGGTACCAGGGCCGCGAGCTCTATGAGAGGCCACCCCACCTGTATGCTGTGGCCAACGCCGCCTACAGAGCAATGAAGCGCCGGTCCAGGGACACCTGCATTGTTATTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000006377:ENSBTAT00000008366:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.079 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=PU(3.1=55.3)
A:
NA
C2:
PF0006316=Myosin_head=FE(10.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCAGGATGGAGGACGATGAA
R:
CTGAAATAACAATGCAGGTGTCCC
Band lengths:
310-1779
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]