GgaINT0010693 @ galGal3
Intron Retention
Gene
ENSGALG00000003157 | MYH7B
Description
NA
Coordinates
chr20:2609652-2610055:-
Coord C1 exon
chr20:2609912-2610055
Coord A exon
chr20:2609809-2609911
Coord C2 exon
chr20:2609652-2609808
Length
103 bp
Sequences
Splice sites
5' ss Seq
TATGTAAGC
5' ss Score
4.2
3' ss Seq
CACCCCCTTCCCACCCACAGACC
3' ss Score
10.98
Exon sequences
Seq C1 exon
ACGCGGGTGGTGAAGGAAGATGAGCTGCAGGCCATGAACCCCCCCAAGTTCGACATGATTGAAGACATGGCCATGCTGACGCATCTCAACGAGGCCTCCGTGCTCTACAACCTCAAGCGCCGCTACTCCCACTGGATGATCTAT
Seq A exon
GTAAGCCGCCGCCGCCGGGGGGTCCCTGCCTCTCTCCCCCCGCCATGAGGGGGAGGGCTGCCGGGGCTCCCGGTCACCTCAGCCACCCCCTTCCCACCCACAG
Seq C2 exon
ACCTATTCGGGGCTCTTCTGCGTCACCATCAACCCCTACAAATGGCTGCCGGTCTACACTGCGCCCGTGGTGGCGGCCTACAAGGGGAAGCGGCGCTCCGAGGCACCGCCACACATCTACTCCATCGCTGACAACGCCTACAACGACATGCTGCGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003157:ENSGALT00000004997:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.125 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0273614=Myosin_N=PD(16.7=14.6),PF0006316=Myosin_head=PU(4.1=58.3)
A:
NA
C2:
PF0006316=Myosin_head=FE(7.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGGAAGATGAGCTGCAGGC
R:
ATGGAGTAGATGTGTGGCGGT
Band lengths:
258-361
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]