BtaINT0097373 @ bosTau6
Intron Retention
Gene
ENSBTAG00000003512 | MYH7B
Description
myosin, heavy chain 7B, cardiac muscle, beta [Source:HGNC Symbol;Acc:HGNC:15906]
Coordinates
chr13:64890247-64891036:+
Coord C1 exon
chr13:64890247-64890390
Coord A exon
chr13:64890391-64890879
Coord C2 exon
chr13:64890880-64891036
Length
489 bp
Sequences
Splice sites
5' ss Seq
TATGTGAGC
5' ss Score
2.97
3' ss Seq
TCTATACTCTCTCTCCCCAGACA
3' ss Score
11.1
Exon sequences
Seq C1 exon
GTGCTGACGGTTCGCGAGGCTGAGCTGCAGCCCATGAACCCGCCCCGCTTCGACTTGCTGGAGGACATGGCCATGATGACGCACCTCAACGAGGCATCCGTACTGCACAACCTGCGCCAGCGTTATGCTCGCTGGATGATCTAT
Seq A exon
GTGAGCCTGGAACCGAGGAGGGGCCACGGGTGGGATGGGGCTGTGCGTGGTGGGGGCGGGGCCGTACCATCAGGGGCGGGGCTAGAGCGAGAGCCACAGCTCGGCGGGGTCGGGACCGTGGGGAGGGCGCGGGGCTGTGTGTGGTGGAGGAGCAGGGCTAGAGGTAGGGTAGGGTGATGTCATGGGGCTGAGGGGGCGGGGCCACCGGCTGGTGGGCGGAGCTGGAGGTGGGGCTGGAGGTTTGGCCACGGGACTGTAGGGAAGGAGCGGCAGCCGCCGAGTCGCTGGGCAATGGGCTCTGGAGGTGGGACCACAGGCTGAGGGCAGGAGTGAGAGCTAGGGCGGGGCCAGGACGGCCACAGAGGTGTGGCGTCGCACCTTAGGCAGCTCATTTTGGAGAATTTTTGCAAAGATCATAGTTTTGCGAGGGCTAGAGCTTGAGGACGGGAACTTGGCCTCCAATAACCCATCTATACTCTCTCTCCCCAG
Seq C2 exon
ACATACTCGGGCCTCTTCTGTGTCACCATCAACCCCTACAAATGGCTCCCTGTCTATACAGCCTCCGTGGTAGCAGCTTACAAGGGAAAGCGCCGCTCGGAGGCCCCGCCCCACATATACGCGGTGGCGGATAACGCCTACAATGACATGCTGCGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003512:ENSBTAT00000039242:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.062 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0273614=Myosin_N=PD(16.3=14.6),PF0006316=Myosin_head=PU(29.8=58.3)
A:
NA
C2:
PF0006316=Myosin_head=FE(55.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGCTGACGGTTCGCGAG
R:
GCAGCATGTCATTGTAGGCGT
Band lengths:
298-787
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development