HsaINT0107916 @ hg38
Intron Retention
Gene
ENSG00000078814 | MYH7B
Description
myosin heavy chain 7B [Source:HGNC Symbol;Acc:HGNC:15906]
Coordinates
chr20:34979661-34980734:+
Coord C1 exon
chr20:34979661-34979804
Coord A exon
chr20:34979805-34980577
Coord C2 exon
chr20:34980578-34980734
Length
773 bp
Sequences
Splice sites
5' ss Seq
TATGTGAGC
5' ss Score
2.97
3' ss Seq
TACCTATACTCTCTCTTCAGACC
3' ss Score
8.98
Exon sequences
Seq C1 exon
GTGCTGATGGTGCGTGAAGCCGAGCTGCAGCCCATGAACCCGCCTCGCTTCGACTTACTGGAGGACATGGCCATGATGACGCACCTGAACGAGGCCTCTGTGCTGCACAACCTGCGCCAGCGCTATGCCCGCTGGATGATCTAT
Seq A exon
GTGAGCCCCAGGCCCGGGCCATGGGCGGGGTGGGGCTTGTATGTGGGGCGGGGCTAGAGATGAGGTGCTGGGGGCGGGCCCATAGCGGTGGGGCGGGGCTGTGAGCGGTGGATCGGGGCTGTGAATGATAGAGCGGGTCCATAGCGGGGGTGGGGCTGTGAGCGATGAGGCGGGGCTCTGAGCAGTGGGGGCGGGGCTGGAGGTTGGGCCTTGGGACCTTAGGGGAGCAGCTGTAGCAGTGCGGGGCGGGTCTAGAACTCACCTGCGGACTATGGAGGCCGTGCGTGTGGGCTGGGGCAGGGCTGTGAGCACAAGTCAGGGGTGAGGCCAGGACGGCCACAGAGGGTGTGGTGTGGCAAGTCAAGTAGCTCCTTGAGGAATATCGCAGGGTTCTTCTGAAGACTGGGGCCTGGGGCCTGGGGATGGGAACTTGCGTATCCCTCCCAAAACCCTACCTATGGGGGGAGAATGTGGTGGCCCATGCCTGTAATCCCAGCACTTTGGGAGGGCAAGGCGGGCGGATCACCTGACGTCAGAAGTTCGAGACCAGCCTGGCCAACATGGTGAAACCCCGTCTGTACTAAAAATACAAAAATTAGCCGGTCGTGGTGGCACGCGCTTGTAGTCCTAGCTACCCTGGGAGGCTGAGGCAGGACCCAGGAGGCGGAGGTTGCGGTGAGCCGAGATCATGCCGTTGTACTCCAGCCTGGGAGACAGAGCAAGACTCCATCTCAAAAACAACAACATAAACCCTACCTATACTCTCTCTTCAG
Seq C2 exon
ACCTACTCAGGCCTCTTCTGTGTCACCATCAACCCCTACAAATGGCTCCCAGTCTATACGGCCTCCGTAGTGGCTGCTTACAAGGGAAAGCGCCGCTCAGATTCCCCGCCCCATATATATGCGGTGGCGGACAACGCCTACAACGACATGCTGCGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000078814:ENST00000262873:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.042 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0273614=Myosin_N=PD(16.3=14.6),PF0006316=Myosin_head=PU(4.1=58.3)
A:
NA
C2:
PF0006316=Myosin_head=FE(11.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGCTGATGGTGCGTGAAG
R:
AGCATGTCGTTGTAGGCGTTG
Band lengths:
296-1069
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development