BtaINT0097357 @ bosTau6
Intron Retention
Gene
ENSBTAG00000003512 | MYH7B
Description
myosin, heavy chain 7B, cardiac muscle, beta [Source:HGNC Symbol;Acc:HGNC:15906]
Coordinates
chr13:64898198-64898700:+
Coord C1 exon
chr13:64898198-64898347
Coord A exon
chr13:64898348-64898529
Coord C2 exon
chr13:64898530-64898700
Length
182 bp
Sequences
Splice sites
5' ss Seq
GAGGTGCGG
5' ss Score
6.79
3' ss Seq
CCGGGCGCTGCCCTCTACAGTTT
3' ss Score
6.77
Exon sequences
Seq C1 exon
GTGGTGTTTGCCGTGGGGGCTCTGGCCAAGGCCACCTACGACCGGCTGTTCCGATGGCTGGTGTCTCGGATCAACCAGACGCTGGACACCAAGCTGCCCCGTCAATTCTTCATCGGCGTCCTGGACATTGCGGGTTTTGAGATCTTTGAG
Seq A exon
GTGCGGGCAGGCCCATGGCCCCAGGCTCTGTTCTCTCTGGGGTGGAGGACCATAGGGGTGGGGGCAGGAGCCCTGGGCGTCTGCCTGGAGGCAGGGTGGAGTCCCGCACATCCCTGTTCTCTGTGGGCCTCCATGTCCCCATCTACAAGCAGGCCGGCTGAGCCGGGCGCTGCCCTCTACAG
Seq C2 exon
TTTAACAGCTTCGAACAGCTGTGTATCAACTTCACCAACGAGAAGCTGCAGCAGTTCTTCAACCAGCACATGTTCGTGCTGGAGCAGGAGGAGTACAAGCGGGAGGGCATTGACTGGGTCTTCATCGACTTCGGCCTGGACCTGCAGCCCTGCATCGACCTCATCGAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003512:ENSBTAT00000039242:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(7.2=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(8.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGTTCCGATGGCTGGTGTC
R:
CAGGCCGAAGTCGATGAAGAC
Band lengths:
243-425
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development