DreINT0099877 @ danRer10
Intron Retention
Gene
ENSDARG00000076075 | myh7ba
Description
myosin, heavy chain 7B, cardiac muscle, beta a [Source:ZFIN;Acc:ZDB-GENE-100914-2]
Coordinates
chr11:24968515-24968925:-
Coord C1 exon
chr11:24968776-24968925
Coord A exon
chr11:24968686-24968775
Coord C2 exon
chr11:24968515-24968685
Length
90 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
3' ss Seq
CATGTGGATTCTCTCAACAGCTC
3' ss Score
8.54
Exon sequences
Seq C1 exon
GTTAACTATGCTGTTGGAGCTCTGGCCAAAGCCACTTACGACCGCATGTTCAAGTGGTTGGTGGGGCGTATAAATAGGACGCTCTACACTGCTCTGCCACGCCAGTTCTTTATCGGAGTGCTGGACATCGCCGGCTTTGAGATCTTTGAG
Seq A exon
GTGAGTGACTCTCGAAATTCCACACCGCACTTATCTAGATTTCCGTCGGCATTCACACTTGTGCATCTGTCATGTGGATTCTCTCAACAG
Seq C2 exon
CTCAACAGCTTCGAGCAGCTCTGCATCAACTTCACCAATGAAAAACTGCAACAGTTTTTCAACCATCACATGTTCATCCTGGAACAAGAGGAGTACAAACGGGAAGGCATCGAGTGGACCTTTATTGACTTTGGGCTTGACCTCCAAGCCTGCATTGACCTTATTGAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000076075:ENSDART00000097316:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(7.1=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(8.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATCGCCGGCTTTGAGATCTT
R:
CAATGCAGGCTTGGAGGTCAA
Band lengths:
182-272
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]