MmuINT0103610 @ mm10
Intron Retention
Gene
ENSMUSG00000074652 | Myh7b
Description
myosin, heavy chain 7B, cardiac muscle, beta [Source:MGI Symbol;Acc:MGI:3710243]
Coordinates
chr2:155620992-155621436:+
Coord C1 exon
chr2:155620992-155621141
Coord A exon
chr2:155621142-155621265
Coord C2 exon
chr2:155621266-155621436
Length
124 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGA
5' ss Score
7.66
3' ss Seq
TGGGGCTCTGCCACCCATAGTTT
3' ss Score
5.25
Exon sequences
Seq C1 exon
GTGGTATTTGCCGTGGGGGCCCTGGCCAAGGCTACCTACGACCGGTTGTTCCGATGGCTGGTTTCTCGAATCAATCAGACCCTGGACACAAAGCTCCCTCGACAGTTCTTTATCGGGGTCCTGGACATCGCTGGTTTTGAGATTTTTGAG
Seq A exon
GTGAGAAGAGCTCTCAACCACGGCAGAGGCTGATGGGTGGGTGTGGGGGACCACAGCTGTGCTCCCCACGCCCTCCAGTCTGCATCCATCAGGGGCCTGCTGATTGGGGCTCTGCCACCCATAG
Seq C2 exon
TTTAACAGCTTCGAGCAGCTGTGCATCAACTTCACCAACGAGAAGCTGCAGCAGTTCTTCAACCAGCACATGTTCGTGCTGGAGCAGGAGGAGTACAAGCGGGAGGGCATCGACTGGGTCTTCATCGACTTCGGCCTTGACCTGCAGCCTTGTATCGACCTCATCGAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000074652:ENSMUST00000092995:15
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(7.1=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(8.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTACCTACGACCGGTTGTTC
R:
CGATGAAGACCCAGTCGATGC
Band lengths:
247-371
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types