BtaINT0097374 @ bosTau6
Intron Retention
Gene
ENSBTAG00000003512 | MYH7B
Description
myosin, heavy chain 7B, cardiac muscle, beta [Source:HGNC Symbol;Acc:HGNC:15906]
Coordinates
chr13:64908864-64909270:+
Coord C1 exon
chr13:64908864-64908982
Coord A exon
chr13:64908983-64909073
Coord C2 exon
chr13:64909074-64909270
Length
91 bp
Sequences
Splice sites
5' ss Seq
AAGGTGGGC
5' ss Score
7.93
3' ss Seq
GGTCACCGGGCTCTCTGCAGGCC
3' ss Score
7.12
Exon sequences
Seq C1 exon
GGGAGCTGAGCCGCCTGCTGGAGGAGAAGGAGTCTCTGATTAGCCAGCTGAGCCGCGGGAAGGCCTTGGCCACCCAGAGCCTGGAGGAACTGCGGCGGCAGCTAGAGGAAGAGAGCAAG
Seq A exon
GTGGGCCAGCCGTGGGCAGCCACAGAATGGCGGGGGTGGGGGCACAGGGCCACCGGCCGGCCCCATGCTGAGGTCACCGGGCTCTCTGCAG
Seq C2 exon
GCCAAGAGCGCGCTGGCTCATGCAGTGCAGGCTCTGCGGCATGACTGTGACCTCCTGAGGGAGCAGCATGAGGAGGAGGCTGAGGCCCAGGCCGAGCTGCAGAGGCTGCTGTCCAAGGCCAATGCCGAGGTGGCCCAGTGGAGGAGCAAGTACGAGGCAGATGCCATCCAGAGGACCGAGGAACTGGAGGAGGCCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003512:ENSBTAT00000039242:30
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.225 A=NA C2=0.303
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(4.5=100),PF0003816=Filament=FE(14.2=100)
A:
NA
C2:
PF0157614=Myosin_tail_1=FE(7.6=100),PF0003816=Filament=FE(23.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCAGCTAGAGGAAGAGAGCA
R:
CCTCGTACTTGCTCCTCCACT
Band lengths:
180-271
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development