GgaINT0010723 @ galGal4
Intron Retention
Gene
ENSGALG00000003157 | MYH7B
Description
myosin-7B [Source:RefSeq peptide;Acc:NP_989918]
Coordinates
chr20:2946465-2947001:-
Coord C1 exon
chr20:2946883-2947001
Coord A exon
chr20:2946662-2946882
Coord C2 exon
chr20:2946465-2946661
Length
221 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGA
5' ss Score
8.68
3' ss Seq
ATGAGCTGTTCCTTCCTCAGAGC
3' ss Score
9.07
Exon sequences
Seq C1 exon
GGGAGCTGAGCCGACTGCTGGAGGAGAAGGAGTCATTCATCAACCAGCTGAGCCGTGGCAAGACCTCGTTCACACAGACCATCGAGGAACTCAAGAGGCAACTGGAGGAGGAGACCAAG
Seq A exon
GTGAGACTGCTGGGGCATGGCTGGTCTCTGGGTAGCTCAGAGTGACAGATGGCAGTGCAGCGGGCTGGTGCAATACTGAGGATGTGGGACATAACCTGCATACAGATGCACCAAGGCAGCCTTTAGCCACTGAAAAACAGGATTTCTTCCCTGCTAGCATCCCAGCTGGCATCCAGGGGCCTGGGGCCAACCGCTCATCTCATGAGCTGTTCCTTCCTCAG
Seq C2 exon
AGCAAGAACGCCCTGGCACATGCCCTGCAAGCTTCTCGCCATGACTGCGACCTGCTGCGGGAGCAGTATGAGGAGGAGGTGGAGGCCAAGAGTGAGCTCCAGAGGAACTTGTCCAAGGCCAATGCCGAGGTGGCCCAGTGGAGAACCAAATACGAAACAGATGCTATCCAGAGAACAGAGGAGCTGGAGGAAGCCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003157:ENSGALT00000012499:23
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.400 A=NA C2=0.288
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(4.5=100),PF041569=IncA=PD(10.6=32.5),PF0003816=Filament=FE(17.4=100)
A:
NA
C2:
PF0157614=Myosin_tail_1=FE(7.6=100),PF0003816=Filament=FE(29.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTGCTGGAGGAGAAGGAGTC
R:
CCAGCTCCTCTGTTCTCTGGA
Band lengths:
293-514
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]