DreINT0099893 @ danRer10
Intron Retention
Gene
ENSDARG00000076075 | myh7ba
Description
myosin, heavy chain 7B, cardiac muscle, beta a [Source:ZFIN;Acc:ZDB-GENE-100914-2]
Coordinates
chr11:24955388-24955791:-
Coord C1 exon
chr11:24955673-24955791
Coord A exon
chr11:24955585-24955672
Coord C2 exon
chr11:24955388-24955584
Length
88 bp
Sequences
Splice sites
5' ss Seq
AAAGTAACA
5' ss Score
1.87
3' ss Seq
TTTGCATCTGCTTCTTTCAGTCA
3' ss Score
6.73
Exon sequences
Seq C1 exon
CTGAGCTTGGCAGAAAGCTGGAGGAGCGTGAAGCTCTGGTGTCTCAACTGCAGCGCAGCAAAAACACCTTCAGCCAAAACATTGAGGAGCTGAAGAAACAGCTAGAAGAAGAGAGCAAA
Seq A exon
GTAACAGAAACTACATTCCTCACTTCGTTTGGCTTTTATGTGGAACAAATAAATACTCTGATTTGTCTTTTGCATCTGCTTCTTTCAG
Seq C2 exon
TCAAAGAATGCTTTGACTCATGCCCTACAATCCTCCAGACATGACTGTGATCTGCTGAGAGAGCAATATGACGAAGAACAAGAGGGTAAATCTGAGCTTCAGCGCGCACTGTCCAAAGCTAATGCTGAGGTTGCCCAGTGGAGGACCAAATATGAGACAGACGCCATTCAGAAGACAGAGGAACTCGAAGAAGCAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000076075:ENSDART00000097316:30
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.850 A=NA C2=0.712
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(4.5=100),PF059116=DUF869=FE(25.5=100),PF0003816=Filament=FE(31.5=100)
A:
NA
C2:
PF0157614=Myosin_tail_1=FE(7.6=100),PF059116=DUF869=PD(13.7=31.8),PF0003816=Filament=PD(42.7=80.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTGGCAGAAAGCTGGAGGAG
R:
GCAGATCACAGTCATGTCTGGA
Band lengths:
169-257
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]